Query= MSMg01no198_n12.b1 MSMg01no198_n12.b1 CHROMAT_FILE:
MSMg01no198_n12.b1 PHD_FILE: MSMg01no198_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:12 2005
(680 letters)
>mm_chr4_115483666_115484744
Length = 1079
Score = 1268 bits (656), Expect = 0.0
Identities = 671/676 (99%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 5 gaattccagagctcagcatctgcaacaagcagtctgtaaagagttactgtgtaagcttat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagctcagcatctgcaacaagcagtctgtaaagagttactgtgtaagcttat 264
Query: 65 tgcaagaagtgattgtggacatgagccctaatacttgatacaggaacaaagatatacaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaagaagtgattgtggacatgagccctaatacttgatacaggaacaaagatatacaat 324
Query: 125 tactcttataattacctctcagcataagggttccttttcagtgtttctggcctttggaat 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactctgataattacctctcagcataagggttccttttcagtgtttctggcctttggaat 384
Query: 185 gagaaatatatcgcttctcggccttttggctaagatcaagtgtggaatgagaaatattca 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 gagaaatatatcgcttctcggccttttggctaagatgaagtgtggaatgagaaatattca 444
Query: 245 gggatccacaagactattggcttggttttatttagtgtaatagtgcagttgcattctggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggatccacaagactattggcttggttttatttagtgtaatagtgcagttgcattctggc 504
Query: 305 cattttgacctcatagctcccactctccatgacttcataaactgtagcaataagcttgaa 364
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 505 cattttgacctcatagctcccact-tctatgacttcataaactgtagcaataagcttgaa 563
Query: 365 gatcttagagatgttggctttatatactctttccatgcaccagtgagctggctaaaaaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatcttagagatgttggctttatatactctttccatgcaccagtgagctggctaaaaaca 623
Query: 425 taacccaaaactcctggccagactctaatacaaccagctattctcatcagaataaagact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taacccaaaactcctggccagactctaatacaaccagctattctcatcagaataaagact 683
Query: 485 tgtggatgccccttcagagttgccttcagtgtaactcagtgaattacgggtatacttcaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtggatgccccttcagagttgccttcagtgtaactcagtgaattacgggtatacttcaa 743
Query: 545 taaacaggttcaatgcctgtatactgttaaactgtcgcttatggccctactccctgaact 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaacaggttcaatgcctgtatactgttaaactgtcgcttatggccctactccctgaact 803
Query: 605 ctgcctatgagaagctgatgaatcactacagtgtaaataaaacctttttctaaggagatc 664
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctgcctgtgagaagctgatgaatcactacagtgtaaataaaacctttttctaaggagatc 863
Query: 665 aatctagatttgcatg 680
||||||||||||||||
Sbjct: 864 aatctagatttgcatg 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space: 716230
Effective search space used: 716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_n12.g1 MSMg01no198_n12.g1 CHROMAT_FILE:
MSMg01no198_n12.g1 PHD_FILE: MSMg01no198_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:12 2005
(288 letters)
>mm_chr4_115502217_115502904
Length = 688
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%)
Strand = Plus / Minus
Query: 1 tggcttgcccccagccctggttagtctgagccctgagcctcacactgaatgaggcttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tggcttgcccccagccctggttagtctgagccctgagcctcacactgaatgaggcttgag 428
Query: 61 acagtggcagagaaagcttatccttacctctgactgcctctgactcaactttgaagcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acagtggcagagaaagcttatccttacctctgactgcctctgactcaactttgaagcaag 368
Query: 121 tttcctttttcattgataactgctggggcaggactggggaagaaagggaggggataaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttcctttttcattgataactgctggggcaggactggggaagaaagggaggggataaggc 308
Query: 181 atttctgaggcctccgctttcctttggcctccccattactgattgattgttacagattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atttctgaggcctccgctttcctttggcctccccattactgattgattgttacagattct 248
Query: 241 ctcactctgcctttcaattccacagcctgcctttcctgacccaccgg 287
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 247 ctcactctgcctttcaattccacagcctacctttcctgacccaccgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
