BAC Information

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BAC

Clone NameMSMg01-198O01
Chromosome4 (Build37)
Map Location 33,002,307 - 33,002,677
singlet/doubletsinglet
Overlap geneAnkrd6
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2
Downstream geneLOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198O01.T7 (MSMg01no198_o01.b1)MSMg01-198O01.TJ (MSMg01no198_o01.g1)
ACCAG386025AG386026
length1,144716
length of high quality
(start - end)
---371 (77 - 447)
definitionCHROMAT_FILE: MSMg01no198_o01.b1 PHD_FILE: MSMg01no198_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:15 2005CHROMAT_FILE: MSMg01no198_o01.g1 PHD_FILE: MSMg01no198_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAATATATAAAAAAAANCAAANACCAAAACCNCTCGCCTGGGGAGGAT
GAGATAAGAAATAGAAAATGGCGGGCCGGCAAAAAGAANNNNCCNNCGTG
CGGTGAGGCGGAGGGNNNNNNNNNNNNNGNNGTGGCGAAAAAAAAGGGGN
NGNNNNNNNANGNNNNNNGNNNGGGGGGGGGGGNNNGGGGGNNNNTTTTT
TGGGCGNGGCGCCCGCGGGGGGGNNNGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGNGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGNGGGGGGGGGGGGGGGGGGGGTTTTGTTGTGGGGGGGGGGGGGTG
GGGGGGGGGGTGGGGGTGTGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGG
GGGGGGGGGGGGTATAGGGTGGGGTTGAAGGGAGAGAGGGAAGGAGGGGG
AGGGAAAAGGAAGGGATTATTTTTTTTGTATATCGCACCCCGCCGCCCCC
GAAGATAGAAAAGAAGAGAAGAGAAAAGAGAGAGAGCGGGAGGAGGAGGA
GGGGTGGTAAGAAGAAAAAAAGAAAAATAAAAAAAAAATAGTGTGGGGGG
AGGGGAGGGTGGAAGGAAAGGAATACGTTTAATGTAGGAGAAAAGAAAGA
GGGAGGAAGAGGAAGGGAGAGGAGAAAGAAAAAAAGGAGGGAAGAAAAGG
AAAGAGGGAGTGGGAGAATAAGTAAGAAGAAGAGGAAAGGGAAGAGGTAT
GAGGGAGTGAGGAAGGAGGTAGAAGAGAACGGGGGAGAAGAGAAGGGGGG
TGGCGGAAGAGAATAGAGAAAAGAGGAAGAGGGGGAGAGGGAAGAAGAGA
GGAAGAGAGAAAGAGAGGAGAAAAGAGGAGAAGGAGGGAAGGAAGTAGGC
GAGAAGATGAGGGAGAGAAAGAAGGAGGAGAGGAGAAGGAAGAGAAGGAA
GAAAGAGAAAAGGGAGGGATGAGAGATGATGTTGAGTGGAGTGAGAAGAA
GGGGAGCGTGTGGGAGCGAGCAAGAGGGAGGAAGGAGGTAGGGAAGGAGA
GAAGNGAAGGATAAAGGCATAGTGAAATAAAGGGAGAAGAGTGN
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCTGTGGAGGAAGAAGACCAT
CTGTGTTCTGTAGTGAGCTTTGACCAGTGTACTGTGGAACCTAACTGGGT
TGTGTTTCTTATTTATTTATTTTATTTATATGAGTACACTGTAGCTGTCT
TCAGACACACCAGAAGGGGGGGGGCAAGTTCTGGCCCTCACCTCTTCAGT
TTGTAGTAGCCACACATGTTTGTTGGCTTGAGGCCACGTCACTCTAGTCT
CTGCCTCTGTTGGTACCTCTGTGTCCGTGTTCCCACACTCCTGTGGCACA
TCCCCCATCTCTTTTCTTTCATTTAAAAAATTTTGTTTGACTTTATACGC
TTGGGTGTTTTGCCTGCACGCATGTTTGTACACCGTGTGCTTGCCTGGTG
ACCACAGAGGCTGGCAGAGGTTGCTAAAGCTCCCGGAGCTACACAGTGTC
CTAAGCCACCGTGCTCTAGCTGTTATGGACCTGGTGCTAGAACTGGCACC
AACTCTGGTCCAGTGTGTGTGCTTGTGTGTACTTCTCGGCCCTCATTAAT
TATGTGAGTATGTTATGAGACCGCATTGTTCCCCTATGTCTTTTACACTT
TTTACTTGCCCTTTTCTCTTGTTTCCACGAAACGGCTATACTTGTATTTC
TCCCTTCCTTCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_o01.g1 MSMg01no198_o01.g1 CHROMAT_FILE:
MSMg01no198_o01.g1 PHD_FILE: MSMg01no198_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:15 2005
         (371 letters)



>mm_chr4_33002019_33002789
          Length = 771

 Score =  613 bits (317), Expect = e-180
 Identities = 358/373 (95%), Gaps = 4/373 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccctgtggaggaagaagaccatctgtgttctgtagtgagctttgaccagtgtactgtg 60
           |||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||
Sbjct: 659 tcccctgtggaggaagaagaccatctgtgttctgtagtgagctgggatgagtgtactgtg 600

                                                                       
Query: 61  gaacctaactgggttgtgtttcttatttatttattttatttatatgagtacactgtagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gaacctaactgggttgtgtttcttatttatttattttatttatatgagtacactgtagct 540

                                                                       
Query: 121 gtcttcagacacaccagaagggg--gggggcaagttctggccctcacctcttcagtttgt 178
           |||||||||||||||||||||||  |||||  ||||||||||||||||||||||||||||
Sbjct: 539 gtcttcagacacaccagaagggggtggggg--agttctggccctcacctcttcagtttgt 482

                                                                       
Query: 179 agtagccacacatgtttgttggcttgaggccacgtcactctagtctctgcctctgttggt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agtagccacacatgtttgttggcttgaggccacgtcactctagtctctgcctctgttggt 422

                                                                       
Query: 239 acctctgtgtccgtgttcccacactcctgtggcacatcccccatctcttttctttcattt 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 421 acctctgtgtccgtgttcccacactcctgtggcacatcccccatctcttttccttcattt 362

                                                                       
Query: 299 aaaaaattttgtttgactttatacgcttgggtgttttgcctgcacgcatgtttgtacacc 358
            |||| ||||||||||||||||| | |||||||||||||||||| | |||||||||||||
Sbjct: 361 taaaatttttgtttgactttatatgtttgggtgttttgcctgcatgtatgtttgtacacc 302

                        
Query: 359 gtgtgcttgcctg 371
           |||||||||||||
Sbjct: 301 gtgtgcttgcctg 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)