BAC Information

Click to search

BAC

Clone NameMSMg01-199A04
Chromosome4 (Build37)
Map Location 97,044,714 - 97,045,218
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199A04.T7 (MSMg01no199_a04.b1)MSMg01-199A04.TJ (MSMg01no199_a04.g1)
ACCAG386111AG386112
length734730
length of high quality
(start - end)
368 (57 - 424)505 (86 - 590)
definitionCHROMAT_FILE: MSMg01no199_a04.b1 PHD_FILE: MSMg01no199_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:25 2005CHROMAT_FILE: MSMg01no199_a04.g1 PHD_FILE: MSMg01no199_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCCGGGCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCAACTGACGAACGTCGAATGGCCCAGAAGTACT
GAAAGAGATGTTCAACATCCATAGTCATCAGGGAAATGCAAATCAAAACA
ACCTTGAAATTCTACCTTGCACCAGTCAGAATGGCTAAGATCAAAAACTC
AGGTGACAGCAGATGTGGATGTGGAGAAAGAGGAACACTCCTTCATTGCT
GATGGGATTTCAAGTTGGTACAACCACTCTGGAAATCAGTCTGGTGCTTT
CTCAGAAAATTGGACAAAGTACTACTGGAGGATCCAGCTATACCACTCCT
TGGCATATACGTAGAGGATCAAAACTGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGACCCCCCCCCTTCTTTCCTNTCCCTTTCT
CCCTTCCTTCCCTCTCCCTACTTTTCCCTTCTTCTCCATTTACCCTCCCC
TCCTATTCTTTCTTCCCCCCCTTTTATTTTTCTCCCACTTTTCTTCCCAC
CTCTTTTATCCTTGTTTACTTTTAATAATCTATAACCCCTCTTTTCCCTG
TTCCTTTTTTTAAAATGTTTTTACAAGCCCGTTTTTTACCCTCTTCTTCA
CATACCTCCCCCTCTCCACCATATCTACCACCTATTTATACCCTTAATTC
CCTTTTCCCATCCACTTTTACGAGTCATAACCCC
CACCCCNNCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGAATATTCCA
GCTTTCGGGGGATACACAGGAGAGAGAGCTAGAGGCAGTAGGTTTGAAGG
GAAAGTGTCTATTAAGAAGAAATAAAGGAGGTTCCAATGCATTATCATGA
GGCCACTGAAGTACAGCATGCCTACTGAATGATATTTGTTCCTGTTTACT
TTCCTCCTTGTGGCATTGAGTTGGGATGCACTTGCCATTTAGGCATAATT
ACTATTTTATTCTTATTTTTTTCCACAGTTAAGTGGAGCATTTGAACGCA
GCTGAATTGCTGGGAGCTTTGGTGGAAGAAATCTATTAGCGATATGGCTT
GAAACAATACACAAAAGGCCACTGCGTGCGCCCCACTATCCACGCTTTCA
ACTTCTTTCTGTGGAACAATAAATCTCCGAGTCAGCGAGAAGGCAGAGAC
TCCCATCTAACGAGAGCTGCAGTTTTATCTTTTATTCATTGGCAGGAACA
TTAGCTGTAGGAGGTATTCATATCACACTTTTATTTAAACAAACACAGCT
GGATCACAGCCTCTTAATATTGCAATTCTCTAATGATTAATAACAACATA
GTATTTATCTCTTTTCTTTTGCGCGAATCTCAACTTGTTACAATTTGGCA
GATTCCTTTCCCATACAAATTTGGTATGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_a04.g1 MSMg01no199_a04.g1 CHROMAT_FILE:
MSMg01no199_a04.g1 PHD_FILE: MSMg01no199_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:25 2005
         (505 letters)



>mm_chr4_97044514_97045418
          Length = 905

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagaatattccagctttcgggggatacacaggagagagagctagaggcagtaggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 caagagaatattccagctttcgggggatacacaggagagagagctagaggcagtaggttt 646

                                                                       
Query: 61  gaagggaaagtgtctattaagaagaaataaaggaggttccaatgcattatcatgaggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gaagggaaagtgtctattaagaagaaataaaggaggttccaatgcattatcatgaggcca 586

                                                                       
Query: 121 ctgaagtacagcatgcctactgaatgatatttgttcctgtttactttcctccttgtggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctgaagtacagcatgcctactgaatgatatttgttcctgtttactttcctccttgtggca 526

                                                                       
Query: 181 ttgagttgggatgcacttgccatttaggcataattactattttattcttatttttttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttgagttgggatgcacttgccatttaggcataattactattttattcttatttttttcca 466

                                                                       
Query: 241 cagttaagtggagcatttgaacgcagctgaattgctgggagctttggtggaagaaatcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cagttaagtggagcatttgaacgcagctgaattgctgggagctttggtggaagaaatcta 406

                                                                       
Query: 301 ttagcgatatggcttgaaacaatacacaaaaggccactgcgtgcgccccactatccacgc 360
           ||||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||
Sbjct: 405 ttagcgatatggcttgaaacaatacacaaaaggccactgcgtgtggtctactatccacgc 346

                                                                       
Query: 361 tttcaacttctttctgtggaacaataaatctccgagtcagcgagaaggcagagactccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttcaacttctttctgtggaacaataaatctccgagtcagcgagaaggcagagactccca 286

                                                                       
Query: 421 tctaacgagagctgcagttttatcttttattcattggcaggaacattagctgtaggaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctaacgagagctgcagttttatcttttattcattggcaggaacattagctgtaggaggt 226

                                    
Query: 481 attcatatcacacttttatttaaac 505
           ||||| |||||||||||||||||||
Sbjct: 225 attcaaatcacacttttatttaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)