BAC Information

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BAC

Clone NameMSMg01-199C20
Chromosome4 (Build37)
Map Location 132,431,602 - 132,432,154
singlet/doubletsinglet
Overlap geneStx12
Upstream geneSfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8
Downstream geneOTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199C20.T7 (MSMg01no199_c20.b1)MSMg01-199C20.TJ (MSMg01no199_c20.g1)
ACCAG386215AG386216
length755747
length of high quality
(start - end)		573 (47 - 619)343 (84 - 426)
definitionCHROMAT_FILE: MSMg01no199_c20.b1 PHD_FILE: MSMg01no199_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:39 2005CHROMAT_FILE: MSMg01no199_c20.g1 PHD_FILE: MSMg01no199_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTCTGTAGCCCAGACTGGCCTCAAACTCAGAGTCCACCTGCCG
GTGCCTCTTGAGTGCTGGGATCAAGGTGTGTGCCACCACTGCCTGGCATC
AGCTTACTTTCAGAACAGTTTCATTCTGTAGTCTAGGTTGGCCTTGAGGT
TCAGATTTCCCATATCCTCCTGAGTGCTGGCTGGCAGTCAAGTGTACGCT
GCGTGCATGGCTGCCTGTCTTTTTATTCGTTTAGGTTTATTTATTTATTT
ATTTGTTCTTTTGAGACAGTCTTGCTTGTGTAGCCCTGGAACTTACTATG
TAGACTGTTCTGCCTTTGAACGCACACAGATCAGCCTGCCTTTGTCTCCC
AAGTGTTGGGATTAACGAAGGCATGTGCCACTCTGCCCAGTTTACACATT
GCATTTATAAGATTAAGAAAGCCATACATGCCGGGAGTGGTGACGCAGGC
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCGA
GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGA
GAAACCCTGTCTCGAAAAAACAACATAAACTACTATCAACTAAAAAGACA
GTCTCAGGTATAGTATCTCTGAGGCACTCATTTGGGTTACAGAAAACTAC
ATTATTACCCATTATGCATACTTCCGGTACTAGAGTGTATCATTGTGACT
GACTN

CCCCNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGTATCCACACGGCA
GTTCACAGCTATCTGTAACTCCAGTTTTAGTGGATTTGACATCCTCTTCT
GGCCTCCATTGGCACCAAGAACACACCTAGCACACAGATACACTCCTATA
CCTTTAACACATAAAATTAATGTGCAAAGAAGTATTGACCAGGGACTAAT
AAGATGGCTCAGCTGGTGAACTTTTTTTTTTTTTTTAAAGATTTATTTAC
TTATGTATATGAGAACTCTGTAGCTGTACAGGTGGTTGTGAGCCATTTTG
TGGTTGCTGAGAATTGAACTCAGGACCTCTGCTTGCTCCGGCCCTGCTCC
AGCCCAGCTTGCTCTGACCCAAAGACCCCCCATTATATGTAAGTACACTG
TCACTGTCTTCAGAAACACCAGAAGAGGGCATCGGATCTCATTACAAATA
GTTGTGAGCCACCATGTGGTTTCTGGGAATTGAACTCAGGACCTTCGTAA
GAGCAGTCTGTGTTCTTACCCACTGAGCCATCACTCCAGCTCTCAGCTGG
TGAACTTAATGATCATCTATGTGTTAGCAGGAAGTCAACTTCCCCCGTCT
TCTGACCTTCCATTTTCTCACTGTGGCGCACTTGTACAAAATGCAGGGGC
AAATGACTTTAACCCGTTGACTTACCTGGTACTGTTTGAATCTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_c20.b1 MSMg01no199_c20.b1 CHROMAT_FILE:
MSMg01no199_c20.b1 PHD_FILE: MSMg01no199_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:39 2005
         (573 letters)



>mm_chr4_132431602_132432574
          Length = 973

 Score = 1038 bits (537), Expect = 0.0
 Identities = 549/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagcccagactggcctcaaactcagagtccacctgccggtgcctctt 63
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggaactcactctgtagaccagactggcctcaaactcagagtccacctgccggtgcctctt 494

                                                                       
Query: 64  gagtgctgggatcaaggtgtgtgccaccactgcctggcatcagcttactttcagaacagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gagtgctgggatcaaggtgtgtgccaccactgcctggcatcagcttactttcagaacagt 434

                                                                       
Query: 124 ttcattctgtagtctaggttggccttgaggttcagatttcccatatcctcctgagtgctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttcattctgtagtctaggttggccttgaggttcagatttcccatatcctcctgagtgctg 374

                                                                       
Query: 184 gctggcagtcaagtgtacgctgcgtgcatggctgcctgtctttttattcgtttaggttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctggcagtcaagtgtacgctgcgtgcatggctgcctgtctttttattcgtttaggttta 314

                                                                       
Query: 244 tttatttatttatttgttcttttgagacagtcttgcttgtgtagccctggaacttactat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttatttatttatttgttcttttgagacagtcttgcttgtgtagccctggaacttactat 254

                                                                       
Query: 304 gtagactgttctgcctttgaacgcacacagatcagcctgcctttgtctcccaagtgttgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtagactgttctgcctttgaacgcacacagatcagcctgcctttgtctcccaagtgttgg 194

                                                                       
Query: 364 gattaacgaaggcatgtgccactctgcccagtttacacattgcatttataagattaagaa 423
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gattaaggaaggcatgtgccactctgcccagtttacacattgcatttataagattaagaa 134

                                                                       
Query: 424 agccatacatgccgggagtggtgacgcaggcctttaatcccagcacttgggaggcagagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agccatacatgccgggagtggtgacgcaggcctttaatcccagcacttgggaggcagagg 74

                                                                       
Query: 484 caggcgaatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccag 543
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  caggcgaatttctgagtttgaggccagcctggtctacaaagtgagttccaggacagccag 14

                        
Query: 544 ggctacacagaga 556
           |||||||||||||
Sbjct: 13  ggctacacagaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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