BAC Information

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BAC

Clone NameMSMg01-199K19
Chromosome4 (Build37)
Map Location 115,483,327 - 115,483,869
singlet/doubletsinglet
Overlap geneAtpaf1
Upstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik
Downstream geneMobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199K19.T7 (MSMg01no199_k19.b1)MSMg01-199K19.TJ (MSMg01no199_k19.g1)
ACCAG386521AG386522
length728748
length of high quality
(start - end)		656 (49 - 704)543 (77 - 619)
definitionCHROMAT_FILE: MSMg01no199_k19.b1 PHD_FILE: MSMg01no199_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:19 2005CHROMAT_FILE: MSMg01no199_k19.g1 PHD_FILE: MSMg01no199_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTC
AAAGATAAAAGAACCTCTGGTATAATCACCATGCCTGACCTAAAGCTGTA
CTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGAC
AAGTAGACCAATGGAATAGAATTGAAGACCCAAAAATGAAACCACACACC
TATGGCCACTTGATCTTCGACAAGGGAGCTAAAACTATCCAGTGGAAGAA
ATACAGCACTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTA
GAAGAATGCCAATTGATCCATTACTATCTCCTTGCACTAAGGTCAAATCT
AAGTGGATCAAGGAACTCCACATAACACCAGAGACACTGAAACTTATAGA
GAAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCATAGGGAAAAATTCCT
GAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGG
ACCTCATGTAACTGCAAAGCTTCTGCAAGGCAAAAGATACTGTCAATAAG
ACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATC
AGATAGGGGACTAATATCCAATATATATAAAGAACTGAAGAGAGTGGACT
CCAGAANATCAAATAACACCATTTAAAA

NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGTGTGGGTGGGCTTCAGGCC
ATCCAGGACTGAGCCAACACTGTGAAGAGACAATCCAGATACCTCTAAGT
CTTATCTTGGTTCTGGGCACGTTTCAGTTCGGCTCCAAGTCCACTTTGCT
CCAACTCAGCGATGACAGACATATATTTGAACTCATTTGGTCTGAAGTTA
AAGGTCTCTACTAGCCCATAGATCTCCTTCCGATCGGTGGCGTAGAAGAG
CTGAACCTGATTGGCGATGCACTGTGCCTCCACAACATTCTGCAAGGCAA
TGAGAGCAGTGAGGCACTTTCCTGCACAAGCCCAAAGCTCTGTGCCCAAG
TTCTGTGGAGGAGTCACTGTTCCTGAAAAGCTTCCCCAACTCCCTGACCT
CTCATATCTTCGTTAGATGTTCCTTCCACATGGGCAAGGCATCTTGTTTA
CCACTCTCAGCACCTTCTCTTATATTTGTTTTTCTTTTTGGCCTGGACTC
TTTAATATAAAATCTTCAAAGATACAGACATCATGACTTATTTTATGTTC
CAATACATAGTGATATAATGTTTGCTGAGTAAGTTAGTTCAAATGATAAC
AATTTCTCTATTTAGTTCCTAACTAACCACTACATACATCCCAGGAAGAG
GGGCAAGAGTTACCTAGCTCTAAAAATAAGTGTTGCAGTACTGAGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_k19.g1 MSMg01no199_k19.g1 CHROMAT_FILE:
MSMg01no199_k19.g1 PHD_FILE: MSMg01no199_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:19 2005
         (543 letters)



>mm_chr4_115483127_115484069
          Length = 943

 Score = 1027 bits (531), Expect = 0.0
 Identities = 540/543 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggtgtgggtgggcttcaggccatccaggactgagccaacactgtgaagagacaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aagggtgtgggtgggcttcaggccatccaggactgagccaacactgtgaagagacaatcc 684

                                                                       
Query: 61  agatacctctaagtcttatcttggttctgggcacgtttcagttcggctccaagtccactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agatacctctaagtcttatcttggttctgggcacgtttcagttcggctccaagtccactt 624

                                                                       
Query: 121 tgctccaactcagcgatgacagacatatatttgaactcatttggtctgaagttaaaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgctccaactcagcgatgacagacatatatttgaactcatttggtctgaagttaaaggtc 564

                                                                       
Query: 181 tctactagcccatagatctccttccgatcggtggcgtagaagagctgaacctgattggcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctactagcccatagatctccttccgatcggtggcgtagaagagctgaacctgattggcg 504

                                                                       
Query: 241 atgcactgtgcctccacaacattctgcaaggcaatgagagcagtgaggcactttcctgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atgcactgtgcctccacaacattctgcaaggcaatgagagcagtgaggcactttcctgca 444

                                                                       
Query: 301 caagcccaaagctctgtgcccaagttctgtggaggagtcactgttcctgaaaagcttccc 360
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caagcctgaagctctgtgcccaagttctgtggaggagtcactgttcctgaaaagcttccc 384

                                                                       
Query: 361 caactccctgacctctcatatcttcgttagatgttccttccacatgggcaaggcatcttg 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cgactccctgacctctcatatcttcgttagatgttccttccacatgggcaaggcatcttg 324

                                                                       
Query: 421 tttaccactctcagcaccttctcttatatttgtttttctttttggcctggactctttaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttaccactctcagcaccttctcttatatttgtttttctttttggcctggactctttaat 264

                                                                       
Query: 481 ataaaatcttcaaagatacagacatcatgacttattttatgttccaatacatagtgatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ataaaatcttcaaagatacagacatcatgacttattttatgttccaatacatagtgatat 204

              
Query: 541 aat 543
           |||
Sbjct: 203 aat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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