NNAATGCACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTTTTCTTTTCTTTGTTTAGTGATTAAATGAGTAGAATGGTGAATAT
CATTTCACACTTGTTAAATTTGTGCAAGACCCATATGAAGGTGAGTTTTA
TTAATGGCAAAATAGAGTTAAAGTTTGATGTGATTAAATATATATGCAAT
AAAAAGGATGGGGAACATAAAAGAAATGATAGTTAATATCACTTCAAATA
GGACCTTCTAAAAAAGGTTTACATAGAAGTTAAAAATGAGGAACTTAGGA
AATTAGTCTGAACAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTCTG
GGACAGGCGGAAGCACAGAGCCGCTGAGGCAGCACCCTCGGCGGGCCGCA
TACAGCCGGCCACCATCCAGACCAGAGGACAGGTGTCCGCCTGGCTTGGG
AGTTTTTCTCACCCTCAGTAGCAGTGGTCGCCATCTGGATTCCGTGACTC
CGCGGGACCTAGGAAATTAGTCTGAACAGGTTAGAGGGTGAGCCAGAGAA
CCGGACAGCTTCTGGGACAGGCAGAAGCACAGAGCCGCTGAGGCAGTACC
CTTTGCAGGCTGCAGACAGCCTGCCACCATCCAGACCAGAGGACAGGTGT
CCGCCTGGCTCTGGAGGCGGCCTCAGCCTCACGAGCAGCGTTCGCCATCT
TGATTCTTGTACTCCCTGTAACTTATTAATTTACTCTGCCCTCATTATAT
TTTGCCCCACTAAATCTGACTTCTTCTTGTTTTCTTGCTTTTTCTCTCTC
TTTTCTGTATTTATCCCTGTTTTGTTTCTTCTTCTTCTATCTGTTTCCAT
TTCCCTCTTCTCTTTTCTCTTTTCTCTCCCTTGTTTCTATTTTTTTCTTC
TCTATTTCTCTTCTCTTTTCTTTTTCTCTTTTTTTTTATTTTTCCTTCTC
TCTCTCTTTTTCTCTCTCTCTCTTCTTCTCCTTATTTTTTTTCTCTCTTT
TCCTTTTTTTTTTATCTTTTTTTCGCTTGTCCTTTTCTTTTCCTCTTCAT
TTTTTCTTCTTTTCTCTTTTTTTTTCTTTTTCTTTTTCTCTTTTTTTATT
TTTTCCCTTTTCCTTTTTCTTTCTTTCATTTCCTTTCTTACCCTTTTTAT
TTTTCTTTCTCCCTACCATTTTTTCTCTTTTCTCTCTTCTTTCTATTTTT

CTGTTTTTNNNNNTAGATAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTGGGCCTCTGCAGAGGTTTC
TGGGAGTGTGGAGGAAGATGGAGGCAACTACAACTGACAGACCTGCATTT
TTCAGAGTGTATCAAGTGGTGATTTACCCTGGAGGGTGTTGTGATGTCTT
AATAGGAGTTTTCACTGTGTCATGTTTTCAGGAAAAGCTAGGGTTTATGT
GCGCCAAAAGTGTACATTAACCCCTTCCATAACAGGCACAGAAATCTCCT
GCTGCTCTCAACATTCTTGCTTTGTTTTCTAATCAGCAAAATATGCCCCA
CCCTAATTTCTTCATGCATTTCGCTGAGACTTGGGAAGAAAGATATTAAT
GAGGTAACTCTCCCAAGCATATAACTGGATTGATTAAAAGATCCAGATGG
ACAGCCACTGTACTTAGATAAATACATGAAAAGCCAGTTTGGAGCACTAA
ACGGTGGCACTTATTGCAAAGTGGCACTGAACACTGCCGTTTCTTCTATT
TCTGAAGCAATTTAAATTTCAGGCCTCCTTTGCATCACTGGCTCTATAGC
CATCAGTAACCAGGGGACCTTTACATTCTCTGCACACATATTAGTTCTTC
TACACTTTTTTTTAATGATCTAACTTCCTAATGAACTTCTATTCTAATCT
TTCTGTTCTTGTTCTGCTACCTCCTGTACTTTTGCTTGTTCTCTTTTCAG
ATATATATATGCTCCACATTGAATCTCTTCTCTCCCTGAATTTCATCCTC
TATTTACTGTGCATGATTATTTCTTTGTGTTTTGTATTTCTTTATTTTCC
CTCCATGATAATTCCTCTGAGTTCCCCTTCCTTTCCCTTCGCTTTTTTCA
TTTCTACTCCCTCTTTATTTTTCTTTATTCTTCCCTTATTTCTCTATTTT
CTTTTATGTTTTTTTTCTCCCCTTCTTTTCTTTTTTTTTTTTTCTTTCTC
CTCTTTTCTTTTTTTTTATTTTATTTCTTTTTTTTTTTTTCCTCTTTCTC
TCTCTTTTTTTTCTCTTTTTTTTCTTTCCTTTTCTATTTTTTTTTATCTT
TTCTTCTTTTTTTTCTTTTCTCTTTTCTTCTTTCTTTTTTTTTTCTTTTT
CTCCTTTTCTTTTCTTTCTTCTTTTTCCCTCTTCTTTTCCTCTTTTCTTT
TTTTTCTTATTTT

Query= MSMg01no201_a19.b1 MSMg01no201_a19.b1 CHROMAT_FILE:
MSMg01no201_a19.b1 PHD_FILE: MSMg01no201_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:54 2005
         (409 letters)



>mm_chr4_75075426_75076234
          Length = 809

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttttcttttctttgtttagtgattaaatgagtagaatggtgaatatcatttc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaattcagttttcttgtctttgtttagtgattaaatgagtagaatggtgaatatcatttc 389

                                                                       
Query: 65  acacttgttaaatttgtgcaagacccatatgaaggtgagttttattaatggcaaaataga 124
           |||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||
Sbjct: 388 acacttgttaaatttgtgcaagaaatatatgaaggtgagttttgttaatggcaaaataga 329

                                                                       
Query: 125 gttaaagtttgatgtgattaaatatatatgcaataaaaaggatggggaacataaaagaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gttaaagtttgatgtgattaaatatatatgcaataaaaaggatggggaacataaaagaaa 269

                                                                       
Query: 185 tgatagttaatatcacttcaaataggaccttctaaaaaaggtttacatagaagttaaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgatagttaatatcacttcaaataggaccttctaaaaaaggtttacatagaagttaaaaa 209

               
Query: 245 tgag 248
           ||||
Sbjct: 208 tgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no201_a19.g1 MSMg01no201_a19.g1 CHROMAT_FILE:
MSMg01no201_a19.g1 PHD_FILE: MSMg01no201_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:54 2005
         (570 letters)



>mm_chr4_75059885_75060854
          Length = 970

 Score =  948 bits (490), Expect = 0.0
 Identities = 547/566 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   ctgggcctctgcagaggtttctgggagtgtggaggaagatggaggcaactacaactgaca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctgggcctctgcagagctttctgggagtgtggaggaagatggaggcaactacaactgaca 264

                                                                       
Query: 65  gacctgcatttttcagagtgtatcaagtggtgatttaccctggagggtgttgtgatgtct 124
           || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 gagctgcatttttcagagtgtatcaagtggtgatttgccctggagggtgttgtgatgtct 324

                                                                       
Query: 125 taataggagttttcactgtgtcatgttttcaggaaaagctagggtttatgtgcgccaaaa 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taataggagtgttcactgtgtcatgttttcaggaaaagctagggtttatgtgcgccaaaa 384

                                                                       
Query: 185 gtgtacattaaccccttccataacaggcacagaaatctcctgctgctctcaacattcttg 244
           | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 gcgtacattaaccccttccataacaggcacagagatctcctgctgctctcaacattcttg 444

                                                                       
Query: 245 ctttgttttctaatcagcaaaatatgccccaccctaatttcttcatgcatttcgctgaga 304
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 445 ctttgttttctaatcaacaaaatatgccccaccctaatttgttcatgcatttcgctgagg 504

                                                                       
Query: 305 cttgggaagaaagatattaatgaggtaactctcccaagcatataactggattgattaaaa 364
           ||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||
Sbjct: 505 cttgggaagaaagatattaatgaggtaacacacccaagcatataaatggatagattaaaa 564

                                                                       
Query: 365 gatccagatggacagccactgtacttagataaatacatgaaaagccagtttggagcacta 424
           |||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 565 gatcaagatggacagccaatgtacttacataaatacatgaaaagccagtctggagcacta 624

                                                                       
Query: 425 aacggtggcacttattgcaaagtggcactgaacactgccgtttcttctatttctgaagca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacggtggcacttattgcaaagtggcactgaacactgccgtttcttctatttctgaagca 684

                                                                       
Query: 485 atttaaatttcaggcctcctttgcatcactggctctatagccatcagtaaccaggggacc 544
           |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 atttaaatttcaggcctcatttgcatcactggctctatagccatcggtaaccaggggacc 744

                                     
Query: 545 tttacattctctgcacacatattagt 570
           ||||||||||||||||||||||||||
Sbjct: 745 tttacattctctgcacacatattagt 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)