Query= MSMg01no201_c23.b1 MSMg01no201_c23.b1 CHROMAT_FILE:
MSMg01no201_c23.b1 PHD_FILE: MSMg01no201_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:09 2005
(419 letters)
>mm_chr4_58507463_58508281
Length = 819
Score = 667 bits (345), Expect = 0.0
Identities = 381/403 (94%), Gaps = 17/403 (4%)
Strand = Plus / Minus
Query: 16 gaattctttt-agtacttctgtccaagttttcccttaaagttattaaaactgtctcttga 74
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gaattcttttaagtacttctgtccaagttttcccttaaagttattaaaactgtctcttga 735
Query: 75 tatgtagaataggaaaagctgctttttgttgaatattttaatataattcttagtccagtc 134
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tatgtagaataggaaaagcagctttttgttgaatattttaatataattcttagtccagtc 675
Query: 135 aaagcaaaatcagtttcccagagcaggtttacatgagggaacaacaagagaagcaagaaa 194
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atagcaaaatcagtttcccagagcaggtttacatgagggaacaacaagagaagcaag--- 618
Query: 195 agatgggaaatctaaaagaaataagcatttactgccatgtttaaaaactgaaacggaaca 254
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 -------------aaaagaaataagcatttactgccatgtttaaaaactgaaacggaaca 571
Query: 255 agttgctaaatgtgctctgacagtaagtagaacctgctgtagaaagcttaatgcacacgg 314
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 570 agttgctaaatgtgctctgacagtaagtagaacctgctgtagagagcttaatgcacacag 511
Query: 315 aacatggagtttcagcctatctgtttagtgacgactgcatttcagagcctgcctgtgctc 374
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 510 aacatggagtttcagcctatctgtttagtgacaactgcatttcagagcctgcctgtgctc 451
Query: 375 catggaggttcattcccagagggttttgatttaagcctcagaa 417
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 catggaggttcattcccagagggttttgatttaagcctcagaa 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_c23.g1 MSMg01no201_c23.g1 CHROMAT_FILE:
MSMg01no201_c23.g1 PHD_FILE: MSMg01no201_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:10 2005
(734 letters)
>mm_chr4_58352208_58353341
Length = 1134
Score = 1222 bits (632), Expect = 0.0
Identities = 703/734 (95%), Gaps = 12/734 (1%)
Strand = Plus / Plus
Query: 1 ggaatcagggatgtcccggaatggcgtgcttaggtgtgaacagaaaacagtgggcagctg 60
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 213 ggaatcagggatgtttaggaatggcgtgcttaggtgtgaacaggaaacagtgggcagctg 272
Query: 61 tagttagagtattttaataaatcctgacacagggttccttccctccttataccatttgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tagttagagtattttaataaatcctgacacagggttccttccctccttataccatttgtg 332
Query: 121 ttctcagatgaaaggcacgcacagcctttatatcttaatatatcttaagcagcataatag 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttctcagatgaaaggcacacacagcctttatatcttaatatatcttaagcagcataatag 392
Query: 181 ctgagcaactgcctaacctctatgttgttagaatctactttctatctataaccccatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctgagcaactgcctaacctctatgttgttagaatctactttctatctataaccccatcat 452
Query: 241 tacttactaatttctgtgttctgtcttggctgctcttgacccatttgagcaaccctcggg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 453 tacttactaatttctgtgttctgtcttggctgctcttgacccagttgagcaaccctctgg 512
Query: 301 accacattctcttggcccttttacatggtggctctggttctccctcctgcaggttctttt 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 accacattctctcggcccttttacatggtggctctggttctccctcctgcaggttctttt 572
Query: 361 tcttccatggccgctctcttctctcctctcttgcacactctcctaaggcatggcggcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcttccatggccgctctcttctctcctctcttgcacactctcctaaggcatggcggct-- 630
Query: 421 ctcttctcctccctccttgtgattccaatcctgggaaaccaaatcctcacctgtgtctct 480
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 631 ----------ccctccttgtgattccaatcctgggaaaccaaaacctcacctgtgtctct 680
Query: 481 tctaccaagctgttacctactggcatctttatttaccaatcaggattagccgggggcagg 540
|||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 681 tctaccaagctgctacctgctggcatctttatttaccaatcagaattagccaggggcagg 740
Query: 541 ttcctagaaactatatgtagactccagtcttgggcaccagcacttagccgtacaacaaca 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 ttcctagaaactatatgtagactccagtcttgggcaccagcacttagccgtacagcaaca 800
Query: 601 gcaaaagacaaaacccgacaggcagtgctagggcagtgcttgcttctgagctgttcacag 660
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 gcaaatgacaaaacccgacaggcagtgctagggcagtgcttgcttctgagttgttcacag 860
Query: 661 cactacatagcttttcttctccgaggaaggaaccaacttggcaaacaaggaaagcatgta 720
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 861 cactacatagcttttcttctccgaggaaggagccaacttggcaaacaaggaaagcacata 920
Query: 721 gctttgcttctata 734
||||||||||||||
Sbjct: 921 gctttgcttctata 934
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 734
Length of database: 1134
Length adjustment: 10
Effective length of query: 724
Effective length of database: 1124
Effective search space: 813776
Effective search space used: 813776
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
