BAC Information

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BAC

Clone NameMSMg01-201D22
Chromosome4 (Build37)
Map Location 71,197,587 - 71,197,820
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201D22.T7 (MSMg01no201_d22.b1)MSMg01-201D22.TJ (MSMg01no201_d22.g1)
ACCAG386876AG386877
length698705
length of high quality
(start - end)
234 (125 - 358)230 (126 - 355)
definitionCHROMAT_FILE: MSMg01no201_d22.b1 PHD_FILE: MSMg01no201_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:15 2005CHROMAT_FILE: MSMg01no201_d22.g1 PHD_FILE: MSMg01no201_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGCTACTGAAACTAGAAAAAGTAAACCAGACTAAGACAATGGGC
ATGTATCAATAATTCAAAAACCTAATCAGACACTTCTATCATTTTAAGGC
TTGGAGAACACTACATAAGAGGGGACAGACAGAATGTAAGAACTAGAAGT
AAAGGCTTGCAGAGTATACTTATTTCCTCACATACAAACACTCAGTATGG
GGAGAACATATATAACTCAGGTGGATCACAGAAGGTACAGGTCTCCTGAG
TCATATTCAAGACCCTGGAGGCTACATAACCAGCAAATAATTACAGTGCT
ATAGAAGACTGTTCAATGAAGCTGCCAAAAAAATTGTGGGAGGAACTCAA
GTAATCCAGCTTTCACGACCCATTAACATTTGGCGATGAGCTTTGTGGTG
ATGGACACACACATGCTCATGTATGTAACTCCACATTTCACTAAGTAACC
CTATGAACTCACCTGTTCACAGAGCTAGATGTAGGTAGAAGCACATCTTT
GATTTCTCCTTAGTGCCCTTTCATCATTTATAATATTAGCTTTATCATAA
GAGAAACATTGGCCCAAAAGCCAAAAATTGTGTTGTCAGTCTTTGTGTAG
GTTTAAAGCATGAGCAACAGTTCACCAAATGGTTGATAGAAGGGTGAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCA
GAGAAGCACCTGAAAAATTGCCCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGAAGTGGAGAAAGAGGA
CCACTCCTCCATCGTTGGTGGGATTGCTAGCTTGTACAACCACTCTGGAA
ATCAGTTTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGCATC
CAGTATTGTCTTTCCTGCCCACCCCCCCAGAAGATGTCCCAACCGGTTAG
GAGGACACATGCTCTACAAAAAACATAAAAAACTTATTTGGGGAGGTAGA
AGTTGGATTGAACCCAGATGCCCCTCAACCGAGGAATGGATACAGAAAAT
GTGGTACATTTACACTATGCAGTACTACTCAGCTATTAAAAAAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACCCAATCACAAAGGAACTCACAGAATATATACTCACTGATAAGT
AGATATTAGCCCAAAAACTTAGGATACCCAAGATATAAGATACAATTTGC
TAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_d22.b1 MSMg01no201_d22.b1 CHROMAT_FILE:
MSMg01no201_d22.b1 PHD_FILE: MSMg01no201_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:15 2005
         (234 letters)



>mm_chr4_71197387_71198020
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagacacttctatcattttaaggcttggagaacactacataagaggggacagacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagacacttctatcattttaaggcttggagaacactacataagaggggacagacagaa 260

                                                                       
Query: 61  tgtaagaactagaagtaaaggcttgcagagtatacttatttcctcacatacaaacactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaagaactagaagtaaaggcttgcagagtatacttatttcctcacatacaaacactca 320

                                                                       
Query: 121 gtatggggagaacatatataactcaggtggatcacagaaggtacaggtctcctgagtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gtatggggagaacatatataactcaggtggatcacagaaggtacaggtcacctgagtcat 380

                                                                 
Query: 181 attcaagaccctggaggctacataaccagcaaataattacagtgctatagaaga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcaagaccctggaggctacataaccagcaaataattacagtgctatagaaga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)