BAC Information

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BAC

Clone NameMSMg01-202I05
Chromosome4 (Build37)
Map Location 123,043,338 - 123,043,570
singlet/doubletsinglet
Overlap geneMacf1
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a
Downstream geneD830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202I05.T7 (MSMg01no202_i05.b1)MSMg01-202I05.TJ (MSMg01no202_i05.g1)
ACCAG387642AG387643
length774718
length of high quality
(start - end)
236 (186 - 421)237 (125 - 361)
definitionCHROMAT_FILE: MSMg01no202_i05.b1 PHD_FILE: MSMg01no202_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:21 2005CHROMAT_FILE: MSMg01no202_i05.g1 PHD_FILE: MSMg01no202_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTTCTTTTTAACCCCTTTTTCCTTGCGACTTCCACTTCCCCCCNGCGC
GTTNCCTTCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGCAATTTACGATGCACAGGCTGAGTCTAGGCC
ACACATTCTCTTTTGTATGGCCATTGTTTAACCCAAAAGAATCATATTAG
CCAGGCATGGTGGCCCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGC
AGGTGGATTTCTGAGTTCGAGGCCAGCCTGGGCTACAGAGTGAGTTCCAG
GACAGCCATGGCTACACAGAGAACCCCTGTCTCGAAAGAAAAAACAAGTT
CTTATAATTAAAAAAGCACACTGGTGATGTATAGACTGCCACCAAGCCTA
ATGACCTATAGCCAGGGCTATATATACAAACCCTGTCTCGAGAAACAAAA
CAAAAGAATCATATTTTATGATACTCTTTTTTTAATAAAAGAATAAGAAC
TGGGCAGTGGGCAGTGTTCATTTGACCAAAACCTTGCCTAGTGTGAGGCT
CTGGCTTCAATTTCTAGTATCATATAAGACTGAACTTAGCAATGCACAAC
TCTGATGCTAGCATTTGGAAGGGTTAGACAGGAGGATCAGAAGTTCAAGG
TCTGTTTTTTTTTTTTTTCTCTACCCTGGAAGTTTGAGACCATCCTATGT
TACTTAAGGTCCTGGCCAATACATACTTAGATAAAGTGTAAGTATAGTCT
ATTTTATTACATAGGCCCACTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCCTTTATGCTGCATCTGAAGT
CCCTCCATGGATTGCATTTTATCGCAAACCTAAGTATGAGAGTTGGACCC
ATGCTCGAGACCAAGCTAGAACTCAGTAGTCAAAGGCCCCCTAGAGCTTG
CTGAAACAGCATCCGAAGGCTAACCTGAAACATTAACTCTAAGTGATTGC
TTCCCAAGATGATTCACATGTCTACATTCAGGACGGTATAAAGCTAAGGT
CAAAATACTCTAAATTCTCCATACCTCATCTTCAATCTTATCTGCATCAG
TTGTTGGTCGATATGCATCCTTGCTGCGATGTAAGGCAGCCACAAATTCA
TAGTAGTCAATGTAGCCATCCCCATCTCTGTCAAAAATGTCGGCCACAGC
TGTCATCTCTAACTTGGTGGTTGGGAACTCTGGGGAGAAGAGAACATGAT
TTGAAACATTGAAATACTACAAAGTGTGGAGCAGACTCAAGGAAAGGCCA
TCCAGAGACTGCCCCACCTGAGGAGCCATCCCATATACAGTTACCAAACC
CAGACACTATTGTGGATGCCAAGAAGTACATGCTGACAGGAGCCTGACAT
AGCTGTCTCCTGAGAGGCAAATACAGATGATGACGCTTGTAGCCTACCTG
GACTCCTGAGCATACGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_i05.g1 MSMg01no202_i05.g1 CHROMAT_FILE:
MSMg01no202_i05.g1 PHD_FILE: MSMg01no202_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:21 2005
         (237 letters)



>mm_chr4_123043138_123043774
          Length = 637

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacctaagtatgagagttggacccatgctcgagaccaagctagaactcagtagtcaaa 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 caaacctaagtatgagagttggacccatgctcaagaccaagctagaactcagtagtcaaa 260

                                                                       
Query: 61  ggccccctagagcttgctgaaacagcatccgaaggctaacctgaaacattaactctaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccccctagagcttgctgaaacagcatccgaaggctaacctgaaacattaactctaagt 320

                                                                       
Query: 121 gattgcttcccaagatgattcacatgtctacattcaggacggtataaagctaaggtcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgcttcccaagatgattcacatgtctacattcaggacggtataaagctaaggtcaaa 380

                                                                
Query: 181 atactctaaattctccatacctcatcttcaatcttatctgcatcagttgttgg 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactctaaattctccatacctcatcttcaatcttatctgcatcagttgttgg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)