BAC Information

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BAC

Clone NameMSMg01-203D20
Chromosome4 (Build37)
Map Location 75,072,728 - 75,072,956
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203D20.T7 (MSMg01no203_d20.b1)MSMg01-203D20.TJ (MSMg01no203_d20.g1)
ACCAG388084AG388085
length726741
length of high quality
(start - end)
229 (425 - 653)301 (77 - 377)
definitionCHROMAT_FILE: MSMg01no203_d20.b1 PHD_FILE: MSMg01no203_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:20 2005CHROMAT_FILE: MSMg01no203_d20.g1 PHD_FILE: MSMg01no203_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGTAGCGCGGAATTCTTGAA
GTTTTCCCACAATACCAGGAGTTCAAACAGAACCACTGTTTTCATTAATT
ATACTTAACTTTGCACCANGACCAAGANAACNANNGGCTTCCAGTACAAA
CACAACCTGAAAGATCAGTTACCTAAAAGCCATTGGTCATTTGCTTCCTA
CTGAATTTTTTTGTCACTGGCACAGCAGTAAGAGCTCTTAACTGAATGTT
TCAGTGATAGTTTTGCTGCTGGGAGCTTGCATGAGGTTTCCTCTGGACTG
AGCAGGTTCATATAAATGACATATTACCCTCATATGTCTAGGACCAACAG
TGTTTTTTTCTCCCCCCCACCCAGTGCTAACATTTTCTACTTCATAGAAA
GTCTTAACCCACCAATACAATATATATTTCCACTGAGAAAATGGGATGTA
AAACTCATTTTCAGTCCTTGATAAAATGCTACTGACATTTTATCAAAGCC
TCACTTTGTTCTGATTATGCTGGTGTGCCAGTCCTCTGCTAAAAACTTAC
AGCTCTGCACAGAGCAAAGTTGTTTGCTATTCAGCCCACTTAATTTTCTT
ATATTCAGATTATATGAATGGGTGGTGACTCACTGAACATCCAGGGCCAG
ATTCATATATATCAAGACAAATCATGGCAAAGTCACAGATTCACAATGAC
TATCTAATTCAACATCATCATTTTAC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTCTTTCCAAGACTTGTATCA
TGAATGGGTTTTGGATTTTGTATAATCCTTTCTCTGCATCTAACAAGATA
ATCCTGTAGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACGTTGAT
GGATTTCCATATATTAATCCATCTCTGCATCCCTGGAATAAAACCTACTT
TGTCAGGATGGATGATTGTTTTGACCTGTTCTTCGATTTGGTTACTGAGA
ATTTTATTGAATATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGAA
GTTCTCTATCTTTGTTTTTTTTTTTCCCCCCCCCCCCCATCAGAGTAATT
GTGGTTTCATAGAATGATTCCCCCCCCAAAAAAAAAAGAATCTGTTTTGT
GGAATAGTTTGTGAAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAG
AACTCTGCACTAAGCCCATCTGGTCCCAGACTTTTTTTGTTTGGGAGATA
TCAATGACTGATTCTATTTTTTTATTAAATTTAGCGCTGTCTACCCCCTT
TTTCTGTAGTTGATTTTATCTGTTTCTTGCCTTTTGCCCACTTTTTTGTC
TCCTACCCTCGCAACTTTTTTTTTGTTCCCCTCCTTCTTTTATATAATCT
CTCATTTTTTCCCTACTCCCCATTTTTCTACTTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_d20.b1 MSMg01no203_d20.b1 CHROMAT_FILE:
MSMg01no203_d20.b1 PHD_FILE: MSMg01no203_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:20 2005
         (229 letters)



>mm_chr4_75072528_75073156
          Length = 629

 Score =  404 bits (209), Expect = e-117
 Identities = 224/229 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttccactgagaaaatgggatgtaaaactcattttcagtccttgataaaatgctactg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 429 tatttccactgagaaaatgggatgtaaaaatcattttcagtccttgataaaatgctactg 370

                                                                       
Query: 61  acattttatcaaagcctcactttgttctgattatgctggtgtgccagtcctctgctaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acattttatcaaagcctcactttgttctgattatgctggtgtgccagtcctctgctaaaa 310

                                                                       
Query: 121 acttacagctctgcacagagcaaagttgtttgctattcagcccacttaattttcttatat 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 309 acttacagctctgcacagagcaaagttatttgctattcagcccacttaagtttcttatat 250

                                                            
Query: 181 tcagattatatgaatgggtggtgactcactgaacatccagggccagatt 229
           |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 249 tcagattatatgaatgggtggtgactcactgaacttccaggaccagatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)