TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGTGGATCAGCTCCTCTTTGTAGTAATCTCACAAAGTTGGTGAC
GTGGGGCTTAAAGAGAGACTTTGGTGTCATCCACCATGGGGGTCTCCTTT
AACTTTGCCAGTCACAGGGAGCAGAAAGGTCAGACTAGTATGAAAGGCAT
GGATCTCTCTCCCCTTTCCTAAATTCCCTCTCCTTTCTTCTTTACTTCTC
TCTATTCATGTCCCTGTTCCTCTTCCATTCTTTCCCCCACCCCTCCCTTT
TGACACAAGGCAGACTGGCATGGATCTCCTTCTGGAAGGAAATGGGTAGG
AAATGCCTGGAGAAAGGAATCCTTTAGAAATCCTGTCATCATTCTGGATG
CAAAGGTGGGGGCCCGCTCGCCAAACAGGAAAGGGGAAAACAGAGGCATC
CAAAGAAAGAAGAGAAGACCTCTCCTTCTGAAGGCAGTCGTGGCACTAGC
ACTGGTGGCCGTGGCTATGTGGAGGTAGCAAGCCCACGAGAAGAATGGTA
GAGAAGTCTTGGGTGGGATATGAGAATTTTCTCTACATGCCTGCTGGGCA
GTTACAGGCAATAGGAGCTGATGCATTCTCAGAGCTCATTACAAGATGCT
AACATCACCAGGCAGGACATGCAGAGAACAGTGTTACAGGATGGTTAAAG
GCTCTCACACCAGGGCATCGAAATAAATTCCGCACTGACTTTCTCCAA

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACACTTACAGATGCTGTGCAGAGAGAT
AACTGGGTTTATGTGTGCCCACTGCCAACAATAGTGGCACAACTGTTATT
GGTAAATAAACCCTTTCTGACTGGACTTGAGACCTGTTCTACAGGAGAAA
ATTTCATGCCTGGTACTGTAGAGAAAACCTCATAGGTAGGGAAGATGAGG
CCGAGGGGTAAATTTGTTAATTTGCTAAGTGATCATTTTTTTATATTGTC
TTTTACATATTTGTGTTTAAATGCATATTCCTAGCTGCTCTCAACCCTTG
TCAGAGAAAGTGATTTCTATAATGGGAAGCAACCAGTGCAGAAAGATATA
ACTGATCAAATATTAACAACCCCCTTGATTTCTCAGGTATACATAGGGAA
TCTTTATCAGTCTATACATAATAAGGCTCAGAGAATATTAAATAAAAGGA
TGCAGAAGGGATGTAAAAGTCAGAGAATGGGAGGGAGTACTGGGAAATGC
TGCCTTATGAATACAACATGGCTAGCTAACTCCTGAACTCACAGCAGCAA
TATTTACCAGACCTGCACAAGACCAAGCCAGCCAAAATCTAGCATAGATG
GAGGAATTACTCTGTGGGCTCCATCCATTTCTCAGGAGCTACTGATAACT
GACAGCTGCTGTGAGAGCGAAAATCTTTTGGGGAGGAATAACCAG

Query= MSMg01no204_c20.b1 MSMg01no204_c20.b1 CHROMAT_FILE:
MSMg01no204_c20.b1 PHD_FILE: MSMg01no204_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:37 2005
         (614 letters)



>mm_chr4_55668459_55669472
          Length = 1014

 Score = 1145 bits (592), Expect = 0.0
 Identities = 606/612 (99%), Gaps = 4/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgtggatcagctcctctttgtagtaatctcacaaagttggtgacgtggggct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgtggagcagctcctctttgtagtaatctcacaaagttggtgacgtggggct 264

                                                                       
Query: 65  taaagagagactttggtgtcatccaccatgggggtctcctttaactttgccagtcacagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaagagagactttggtgtcatccaccatgggggtctcctttaactttgccagtcacagg 324

                                                                       
Query: 125 gagcagaaaggtcagactagtatgaaaggcatggatctctctcccctttcctaaattccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagcagaaaggtcagactagtatgaaaggcatggatctctctcccctttcctaaattccc 384

                                                                       
Query: 185 tctcctttcttctttacttctctctattcatgtccctgttcctcttccattctttccccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcctttcttctttacttctctctattcatgtccctgttcctcttccattctttccccc 444

                                                                       
Query: 245 acccctcccttttgacacaaggcagactggcatggatctccttctggaaggaaatgggta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acccctcccttttgacacaaggcagactggcatggatctccttctggaaggaaatgggta 504

                                                                       
Query: 305 ggaaatgcctggagaaaggaatcctttagaaatcctgtcatcattctggatgcaaaggtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaaatgcctggagaaaggaatcctttagaaatcctgtcatcattctggatgcaaaggtg 564

                                                                       
Query: 365 ggggcccgctc--gccaaacaggaaaggggaaaacagaggcatccaaagaaagaagagaa 422
           ||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggggcccgctgtgg--aaacaggaaaggggaaaacagaggcatccaaagaaagaagagaa 622

                                                                       
Query: 423 gacctctccttctgaaggcagtcgtggcactagcactggtggccgtggctatgtggaggt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gacctctccttctgaaggcagtcgtggcactagcactggtggccgtggctatgtggaggt 682

                                                                       
Query: 483 agcaagcccacgagaagaatggtagagaagtcttgggtgggatatgagaattttctctac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agcaagcccacgagaagaatggtagagaagtcttgggtgggatatgagaattttctctac 742

                                                                       
Query: 543 atgcctgctgggcagttacaggcaataggagctgatgcattctcagagctcattacaaga 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atgcctgctgggcagttacaggcaataggagctgatgcattctcagagctcattacaaga 802

                       
Query: 603 tgctaacatcac 614
           ||||||||||||
Sbjct: 803 tgctaacatcac 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)