BAC Information

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BAC

Clone NameMSMg01-204D18
Chromosome4 (Build37)
Map Location 50,882,106 - 50,882,397
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204D18.T7 (MSMg01no204_d18.b1)MSMg01-204D18.TJ (MSMg01no204_d18.g1)
ACCAG388698AG388699
length730738
length of high quality
(start - end)
675 (45 - 719)292 (129 - 420)
definitionCHROMAT_FILE: MSMg01no204_d18.b1 PHD_FILE: MSMg01no204_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:42 2005CHROMAT_FILE: MSMg01no204_d18.g1 PHD_FILE: MSMg01no204_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCCTTTGACACTGGGTCCTCAGGTAGTACTATGTCCAATTTTCT
GAGGAACAGCCAGACTGATTTTCCGAGTGGTCGTACCAACTTGAGATCCC
ACGAACAATGGAGGAGTCCTTTTTCTCCACATCTTCGCCAGCATTTTCTG
TGACCTGAATTTTTATTTTAGACATTCTGACTAGTGTGAGGTAGAATCTC
AGGGTTGTTTTGATTTGCATTTCTCTGATGAATAAGGTTGTTGAAAATTT
CTCTTTTTTCTTTTCAGGTGAAGCATCTATTGTCTTTTTTATTCTTTCAT
TTTATTAAAAATAGATTCTTTTCTCACACAGTACATCCTGATTGTGGTCT
CTGCTTCCTGTGTCCCCCCACATTCCTTCTTACCTCCCATTCAATCCAGG
TTCATTGCCTTTCTGTCTTTCATTTGGGGAAAAAGAGGCTTATAAGAGAA
AATATTAAAATATAACAAAATAAAACATAAGATAAAAAATAAATAACATC
AAAGTTGGACAGAGAAAACCAACAGAAGGAAAAGAAACCAAGAGAAGGCA
CAAGAATAAGAGACCCAGTCTTTAGCTCACTCGGAATCCCATTAAAACAC
TAATCTGGAAGCCATAACATCAATGCAGAGGGCCTGGTGCAGACCTGTGC
AGGCCCCAGGCATGCTGCTTCAGTGTCTCT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACATGGGGCCTCTAACTGGTAAA
GATAAAGTTGGATGTCTCAGGTAACTCGGCCTAAAGTCAGGAAAGAAAAA
GGCATGGAGATAATTAGGAATCTATTTATAATCTTGGCTTCAAACCCTTG
GATGATAAGACTATGACTTAGCAGGCTATGACAAGAACAAAGACTATTAC
TCTTTGTTCTTGATCTGAATTTATGAGTTAATATTAGAAAAAATTCTGAC
ATGTAAAATGGAATTGTTATACCATGAGGTAACAAAGTTCTCCAGACAGC
TGTTAACTTCTAAGCCACTAGAGCATATGGCTTCAATTTTGCTAAAATAA
AATATCTTTCTGAATTAATTCCCACCTCTTAATACACCAGTGCAATAGAA
ATTGGTCAAACAAGTCACAAAGTTAATAATTTGGGCTCATAAAAGTACCA
AACAAATGTAAGAGATGGAATCCATGTTTTCAGAGCAAAAACTTAAAGCT
TTTTTTCCCTTTGTACAACTAACACATTTTCCTGCCAATGTTAGGAAGAT
GTGTGAACAGCATGTCTCTTGGTGGCAAGTGCGACCGTTCTTCTTCCTCC
CCGTTATAACCCGTTCACCATCCAATCCTTCTATCCCGTCATGCTCATTC
CCCATCCTTTTTCATTACCACCTTATCCTCGTCCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_d18.g1 MSMg01no204_d18.g1 CHROMAT_FILE:
MSMg01no204_d18.g1 PHD_FILE: MSMg01no204_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:42 2005
         (292 letters)



>mm_chr4_50881906_50882597
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctaaagtcaggaaagaaaaaggcatggagataattaggaatctatttataatcttggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctaaagtcaggaaagaaaaaggcatggagataattaggaatctatttataatcttggc 260

                                                                       
Query: 61  ttcaaacccttggatgataagactatgacttagcaggctatgacaagaacaaagactatt 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaacccttggatgataagactatgacctagcaggctatgacaagaacaaagactatt 320

                                                                       
Query: 121 actctttgttcttgatctgaatttatgagttaatattagaaaaaattctgacatgtaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctttgttcttgatctgaatttatgagttaatattagaaaaaattctgacatgtaaaa 380

                                                                       
Query: 181 tggaattgttataccatgaggtaacaaagttctccagacagctgttaacttctaagccac 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaattgttataccatgagttaacaaagttctccagacagctgttaacttctaagccac 440

                                                               
Query: 241 tagagcatatggcttcaattttgctaaaataaaatatctttctgaattaatt 292
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagcatatggcttcaattttgctaaaataaaatatctttctgaattaatt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)