BAC Information

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BAC

Clone NameMSMg01-204M14
Chromosome4 (Build37)
Map Location 63,722,246 - 63,722,608
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204M14.T7 (MSMg01no204_m14.b1)MSMg01-204M14.TJ (MSMg01no204_m14.g1)
ACCAG389023AG389024
length763826
length of high quality
(start - end)
366 (47 - 412)193 (78 - 270)
definitionCHROMAT_FILE: MSMg01no204_m14.b1 PHD_FILE: MSMg01no204_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:27 2005CHROMAT_FILE: MSMg01no204_m14.g1 PHD_FILE: MSMg01no204_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTTTCATTCGTGTTGTGAGTTGTTCCTCTTGTCTGACGGTTTA
TTTGGGAACCCAAGAATCTTAGATGGTCCAGGAAATTTGGGACTCATTTG
CTGCCTTCTTCTTCCTTTGCCATGTCAAGAATCCCCATTGCCTGGCTTTT
GAATCTAGAATCAAGCAGTTCTATTTCCTCTATGCCCAACTCTGATGCTA
GGAGTGCAGCAAGGCCTGGGAATCTCAGGATGCATTTCACACTGAAAAAT
AATAATAATAAAAACTATTCATCTATCATGGTACTTGATATTGCAAGAAG
GTAGTACTTGTTCCACATTTCACAAAACCCTACAGTTTCTCATGCCATAA
TGTCTCATGGAACCCCCCCCCCCAAATTTTGCCCATGATACTGTATGTTA
CAATATGATATTAACTTCAGGTCATCCCGATATGAACTATCTGATAATTG
CCACGATCTTTATCTCTCTGCTTGTTAGTATTTCACCACCCCAAACTTGC
ATCCAATTGTCTTTTTGTGCCACATAGCTCCTTTTTCCCGATACTTTAAC
CTGTCACCCTTCTACTCCTTACCCTTAGCCCCTTTTTTTTGCCTTCTATA
GTCTTATATTTTATTTCTAATAGACTGTCCTCCCTACCATCCATCACAAT
CATAATACATCAATTAAATTTTATTTCTTCTTCTTTTTACCTTCCATCAT
TTTCCTATCATTG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATC
ATGAATGGGTGTTGGATCTTGTCAACTGCACTCTCCGTGTCTAAGGAGAT
GATCAAGTGGTTTTTGCCTTTGAGTTTGTTTATATAATGGATTACGTCAT
TGGATTTCCCTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACT
TGGTCAGGATGGATGATTGCTTTAATGCGTTCTTGTCCTTCTCCACTTTC
ATTTCCCTTCTACATACCATACATTTTTTTTATATTTACATCATTTACAT
TTTATTTCTCTTTTTTTTTTTTTCTCTCCCCCCCCCCCATTCTCTTTTAT
TCCATTACCACTTTATTTTTTTCACAACCCCCCAAAAAAAAAATAATTTT
TCCTTTCCTTCTTTCCTCTATATCTACTTTCACCTTTACCCATTTACACT
TTTCTCCTTATCTTTTTATCTTCCTCTCCCCTTTCCCCTTCTATATCCTC
TCTTTCCTCTTCTCTCTCCAATTCCCTCGCATTTCCTATTTTCTCTTCTC
TACTTTACATTTTTACTTCCTTTAACACTCTCATTTTCTCTCTTCTCCCT
CTATTTTTATCCTACTACTTCTCACCTTTCCCTTCTTCTTCCCTCACCTT
TTTTTTTTTCCCCACCATCTTTATCTTCCCTCTTACTATCTCCAATCACC
CCTCTCCTAATACTCCCCTACATATTCATCCTCCTCTATCCATTTTCCTA
CCATAACCCCCTCTCCCTATTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_m14.b1 MSMg01no204_m14.b1 CHROMAT_FILE:
MSMg01no204_m14.b1 PHD_FILE: MSMg01no204_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:27 2005
         (366 letters)



>mm_chr4_63722042_63722808
          Length = 767

 Score =  632 bits (327), Expect = 0.0
 Identities = 354/363 (97%), Gaps = 1/363 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttcattcgtgttgtgagttgttcctcttgtctgacggtttatttgggaacc 64
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 567 gaattcactttcatttgtgttgtgagttgttcctcttgtctgatggtttatttgggaacc 508

                                                                       
Query: 65  caagaatcttagatggtccaggaaatttgggactcatttgctgccttcttcttcctttgc 124
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caagaatctcagacggtccaggaaatttgggactcatttgctgccttcttcttcctttgc 448

                                                                       
Query: 125 catgtcaagaatccccattgcctggcttttgaatctagaatcaagcagttctatttcctc 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catgtcaagaatcctcattgcctggcttttgaatctagaatcaagcagttctatttcctc 388

                                                                       
Query: 185 tatgcccaactctgatgctaggagtgcagcaaggcctgggaatctcaggatgcatttcac 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 387 tatgcccaactctgatgctaggagtgcagcaaggcctgggaatgtcaggatgcatttcac 328

                                                                       
Query: 245 actgaaaaataataataataa-aaactattcatctatcatggtacttgatattgcaagaa 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 327 actgaaaaataataataataataaactattcatctatcatggtacttgatattgcaagaa 268

                                                                       
Query: 304 ggtagtacttgttccacatttcacaaaaccctacagtttctcatgccataatgtctcatg 363
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 267 ggtagtatttgttccacatttcacaaaatcctacagtttctcatgccataatgtctcatg 208

              
Query: 364 gaa 366
           |||
Sbjct: 207 gaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 767
Length adjustment: 9
Effective length of query: 357
Effective length of database: 758
Effective search space:   270606
Effective search space used:   270606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)