BAC Information

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BAC

Clone NameMSMg01-204N12
Chromosome4 (Build37)
Map Location 24,356,998 - 24,357,354
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625462, LOC383998, LOC100040464, LOC623873, LOC664973
Downstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204N12.T7 (MSMg01no204_n12.b1)MSMg01-204N12.TJ (MSMg01no204_n12.g1)
ACCAG389054AG389055
length747738
length of high quality
(start - end)
361 (46 - 406)343 (77 - 419)
definitionCHROMAT_FILE: MSMg01no204_n12.b1 PHD_FILE: MSMg01no204_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:32 2005CHROMAT_FILE: MSMg01no204_n12.g1 PHD_FILE: MSMg01no204_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAGAGCTGGGTTACTCTGTCAATGATGTATATGCTGTTTGTTTT
TAGGGAAAATGTTTGGTTTAAGACCTCACTAATGCCATCATCACCCACCA
GTGGCAACAATGGTGTTGTTCAGACTCTCAAAAAAACTTTGCAAAAGACA
GTGAGCTACAGATGCATGTGTTATATTTTTAGCTCACATACAAATATTAT
AACTCGTATTAAAACAATAGGATTTTTTTTAACAGAGAAGGAATGAATGC
TGCATAATTAAGTACAGTATTTAATTTGGCTGTTGTGAAGCACAAGAATA
AGGTAATAATTTTTATTGTACTAACCACCCTCAAGATGTTCTCTGTGTTA
ATTGGGTTTTTTTCCCCCCCCCACAAATANAAATTCTAATTTCACAATGC
AGTGCTGACAATAGGCGCAGCCAGTGAATTATTCACATCTTTAATTTGCT
CACTTATTGACACTGCTCTGTACTCAGACTCGCATCACTGCTTGGCTACG
CATTATGTCCATTTCCCCGTTACCAAATGCACCACCATCTGAAATCCTTA
CTGTTCTCATCCATCAAATATCCCTAACAATCGTCCATTCCTCTCTCATT
TCCCATATTCTCATTTTTCATTCCTCCCCCTACTCACAATTTTTCCTAAC
TCACATTCACTACCTATTATTCCTTTCTTTTATATTTTTTCTACCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCT
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAATAGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTCCCTTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGAGGTTCCTCAGAAAATTGTACATAGTACTACCAGAGGATT
CTGCAATACCTCTCCTGGGTATATATCCAGAAGATGTTCCAACCGGTAAG
AAGGACACATGCTCCACCACCCCCGGAGCAGCCTTATTTATAATAGACAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGCAGTACTACTCAGCTATTATACACAATGAA
TTTATGAAAGTCCTAGGCAAATGGATGGACCTGGGGGGCATCATCCTGAG
TGAGGTAACCCTATCCCAAAGAGCTCACACAAATGGACCCCCTGAAAACC
GAACATTGGCTACAATTTAAAATACCCTGGAATAATAAACTATTTTGCCA
TTCGCTGAAACCTTATATTATGATTTACCATTTTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_n12.b1 MSMg01no204_n12.b1 CHROMAT_FILE:
MSMg01no204_n12.b1 PHD_FILE: MSMg01no204_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:32 2005
         (361 letters)



>mm_chr4_24356794_24357554
          Length = 761

 Score =  652 bits (337), Expect = 0.0
 Identities = 352/357 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctagagctgggttactctgtcaatgatgtatatgctgtttgtttttagggaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaattcctagagctgggttactctgtcaatgatgtatatgctgtttgtttttagggaaaa 502

                                                                       
Query: 65  tgtttggtttaagacctcactaatgccatcatcacccaccagtggcaacaatggtgttgt 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttggtttaagagctcactaatgccatcatcacccaccagtggcaacaatggtgttgt 442

                                                                       
Query: 125 tcagactctcaaaaaaactttgcaaaagacagtgagctacagatgcatgtgttatatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagactctcaaaaaaactttgcaaaagacagtgagctacagatgcatgtgttatatttt 382

                                                                       
Query: 185 tagctcacatacaaatattataactcgtattaaaacaataggattttttttaacagagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagctcacatacaaatattataactcgtattaaaacaataggattttttttaacagagaa 322

                                                                       
Query: 245 ggaatgaatgctgcataattaagtacagtatttaatttggctgttgtgaagcacaagaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ggaatgaatgctgcataattaagtacagtatttaatttggctgttgtgaagcaaaagaat 262

                                                                    
Query: 305 aaggtaataatttttattgtactaaccaccctcaagatgttctctgtgttaattggg 361
           ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||
Sbjct: 261 aaggtaataatttttattgtactaatcagtctcaagatgttctctgtgttaattggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)