BAC Information

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BAC

Clone NameMSMg01-205D20
Chromosome4 (Build37)
Map Location 95,409,468 - 95,558,476
singlet/doubletdoublet
Overlap gene2310009E04Rik
Upstream geneTek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205D20.T7 (MSMg01no205_d20.b1)MSMg01-205D20.TJ (MSMg01no205_d20.g1)
ACCAG389296AG389297
length740743
length of high quality
(start - end)		291 (124 - 414)340 (77 - 416)
definitionCHROMAT_FILE: MSMg01no205_d20.b1 PHD_FILE: MSMg01no205_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:04 2005CHROMAT_FILE: MSMg01no205_d20.g1 PHD_FILE: MSMg01no205_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,409,468 - 95,409,757)(95,558,137 - 95,558,476)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCAGTACTCTCACTTGAATAGGTTTCCAGAAACAGCCATAAGTACTG
GTTGGATGAATTTAGTGTTGAGCCCCCAAATGTCAATATAAGAGCCTAAC
TTTGTAATGGGATGCCATGCAGGCCTCTCACAAAGCTGCCTTGACAACCA
TGGGCTGTCATATGCTTGCCTGACCTGACCAGCTATGGACCCCATATTCT
GACCAGGAGGAGGGGTCAACTCTCAGCAGAAATATCCCATAGACTCTCAT
TCCCAAAGACAGCCTGGGAGGGGAAGATAAAGATCAAAGAGCAACACAGC
TCAATTCATGTGTTTTCCAGCTCTGGAAAGAGAGGAGGAAGGACTTTGTG
GGAATGAAAAAAATCCCCCACCCACAACATTTTGTTCTGAAAGGACTGGT
TAGAGAGTTCTCCGGCAGACAGGCAGCAGATAGGAGGGGTTTTGTTTGCA
CTTTGTGGGGGTGGTTCGGCCAGGACTCCTGCTGCTGGTATTTTTCTAGC
TTGTAAAAATAGCATTAACTTTGTTCCAGGTCTGCTCTTGGCTCCAGCGC
CCCAACTGTCCTGAAAGAAAATAACAACTTCATTTCTCTCTCAGGCCCCA
CTCCTTTCAGTGTGTCCTGCCTATCAGACCGACTTCTGACTATCCATCGA
AGCTTGAAGATGCTGCCATCTTCTTATAGAAACCTTCCCT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAATGGTAATTATGGAACGGT
AAGCGGCAATTGGTGATGATATTTTCCCCAAGAGAAGAAAAGCATCCTTC
GTGTGTACGTATTCACAGAATGTCAGAGTAAACACAAAAACTTGACAACC
TCAAAGAGGACGAGATCAATTCACCATGACAGTTCAAACTTCAGACTTCA
ATTGATTGTCTAAAAGACAGAGCGGAAGGAAGTAAATCCTGAACTACTGT
CAGTCAACTTGATCCAGTTGATGAGACACATACTAAAGCAGACCCAAATT
CCCAAGGTCCTGAAGCCTTATTCAACGCTCATTTCCTCATAATAATAAAA
GAAAGACAGTGGAAAATAATCCACCCCCCAAGAATGCTTTCAAATAATAA
GAGAATTAAGCCAGACATAACAGGCGGGCAAGGAAACCTTCAGCATTTGC
ATAGTAAATAACTTAACTTCCAAATAACAAACACATGGTTCATAAAAGAA
ACCTTAAGAGAAGTTAAAAGATCTTTCCACCAAGTTTTTTAGCATGTAAC
AGAAGCACTACTCAGAGGAAAATTTATCTCTATGTAGAAAGTCAGTTAGG
AAGTAGAGTGGTGCCAGTCCATAGCAAGCTGCGCAAACCACAGGGACCAA
ATCAGAAACTTAAGATGGGGTGCACAAAAGCAATAGAGAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_d20.b1 MSMg01no205_d20.b1 CHROMAT_FILE:
MSMg01no205_d20.b1 PHD_FILE: MSMg01no205_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:04 2005
         (291 letters)



>mm_chr4_95409268_95409958
          Length = 691

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccaaatgtcaatataagagcctaactttgtaatgggatgccatgcaggcctctcacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccaaatgtcaatataagagcctaactttgtaatgggatgccatgcaggcctctcacaa 260

                                                                       
Query: 61  agctgccttgacaaccatgggctgtcatatgcttgcctgacctgaccagctatggacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgccttgacaaccatgggctgtcatatgcttgcctgacctgaccagctatggacccc 320

                                                                       
Query: 121 atattctgaccaggaggaggggtcaactctcagcagaaatatcccatagactctcattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattctgaccaggaggaggggtcaactctcagcagaaatatcccatagactctcattcc 380

                                                                       
Query: 181 caaagacagcctgggaggggaagataaagatcaaagagcaacacagctcaattcatgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagacagcctgggaggggaagataaagatcaaagagcaacacagctcaattcatgtgt 440

                                                             
Query: 241 tttccagctctggaaagagaggaggaaggactttgtgggaatgaaaaaaa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccagctctggaaagagaggaggaaggactttgtgggaatgaaaaaaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no205_d20.g1 MSMg01no205_d20.g1 CHROMAT_FILE:
MSMg01no205_d20.g1 PHD_FILE: MSMg01no205_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:04 2005
         (340 letters)



>mm_chr4_95557937_95558676
          Length = 740

 Score =  603 bits (312), Expect = e-177
 Identities = 333/340 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggaatggtaattatggaacggtaagcggcaattggtgatgatattttccccaagagaa 60
           |||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||
Sbjct: 540 ctggaatggtaattatggaacggtaagcggcaattggtgatgataaattctccaagagaa 481

                                                                       
Query: 61  gaaaagcatccttcgtgtgtacgtattcacagaatgtcagagtaaacacaaaaacttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaaaagcatccttcgtgtgtacgtattcacagaatgtcagagtaaacacaaaaacttgac 421

                                                                       
Query: 121 aacctcaaagaggacgagatcaattcaccatgacagttcaaacttcagacttcaattgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aacctcaaagaggacgagatcaattcaccatgacagttcaaacttcagacttcaattgat 361

                                                                       
Query: 181 tgtctaaaagacagagcggaaggaagtaaatcctgaactactgtcagtcaacttgatcca 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 360 tgtctaaaagacagagcggaaggaagtaaatcctgagctactgtcagtcaacttgatcca 301

                                                                       
Query: 241 gttgatgagacacatactaaagcagacccaaattcccaaggtcctgaagccttattcaac 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 300 gttgatgagacacagactaaagcagacccaaattcccaaggtcctgaagccttaaccaac 241

                                                   
Query: 301 gctcatttcctcataataataaaagaaagacagtggaaaa 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gctcatttcctcataataataaaagaaagacagtggaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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