Query= MSMg01no205_i04.b1 MSMg01no205_i04.b1 CHROMAT_FILE:
MSMg01no205_i04.b1 PHD_FILE: MSMg01no205_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:24 2005
(545 letters)
>mm_chr4_47143496_47144440
Length = 945
Score = 963 bits (498), Expect = 0.0
Identities = 534/554 (96%), Gaps = 15/554 (2%)
Strand = Plus / Plus
Query: 1 gccacactgacctcagatacctcagaggtgatgcaagtgatgttgctggttaccctgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 198 gccacactgacctcagatacctcagaggtgatgcaagtgatgttgctgggtaggctgtgg 257
Query: 61 gatagacagggcagaatgtgtgtgtgtatgtgtgtgtgtgtatctacaagaaggaaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gatagacagggcagaatgtgtgtgtgtatgtgtgtgtgtgtatctacaagaaggaaaagg 317
Query: 121 cctgctgattacaatggaacctacctaacatcccaccacccaggaggtggagctgggaag 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cctgctgatcacaatggaacctacctaacatcccaccacccaggaggtggagctgggaag 377
Query: 181 atgaagggctagcctgggatatataagaacctgcacctcccccacccacaaaggtggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgaagggctagcctgggatatataagaacctgcacctcccccacccacaaaggtggaga 437
Query: 241 gagctggtggtataaaagaacaaactcctctgttttccttaccaggaagtcataataata 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 438 gagctggtggtataaaagaacaaactcctctgttttccctaccaggaagtcataataata 497
Query: 301 ataataataataataat---aataataataatagtttaagatggaaacatccccccc--- 354
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 498 ataataataataataatgataataataataatagtttaagatggaaacatc------ttg 551
Query: 355 ---aagctgggtagtatgctatttgaacatggatgcaaatccaggaataagtatgcaagc 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aggaagctgggtagtatgctatttgaacatggatgcaaatccaggaataagtatgcaagc 611
Query: 412 atgagggtgagctctcagtctggagtgggaacactcactggatgggaaggggagggccgg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atgagggtgagctctcagtctggagtgggaacactcactggatgggaaggggagggccgg 671
Query: 472 gagcatagaccaagcggtggtactttttgctctggcttattcccagagatagctggggac 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gagcatagaccaagcggtggtactttttgctctggcttattcccagagatagctggggac 731
Query: 532 agaggtgtcagtga 545
||||||||||||||
Sbjct: 732 agaggtgtcagtga 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_i04.g1 MSMg01no205_i04.g1 CHROMAT_FILE:
MSMg01no205_i04.g1 PHD_FILE: MSMg01no205_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:24 2005
(625 letters)
>mm_chr4_47226484_47227508
Length = 1025
Score = 1093 bits (565), Expect = 0.0
Identities = 610/629 (96%), Gaps = 8/629 (1%)
Strand = Plus / Minus
Query: 1 tctgattacccagttactctacagttggcagggctgaggtttggcatggcttatgtacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tctgattacccagttactctacagttggcagggctgaggtttggcatggcttatgtacca 766
Query: 61 tggaggatatggtgagacactatactagaggaaaagtcagatagacacgttccttcctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tggaggatatggtgagacactatactagaggaaaagtcagatagacacgttccttcctgc 706
Query: 121 cttgattcattaaaaagccctactaggcatccatgtgtggcagtctctgtgttagattct 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 705 cttgattcattaaaaagccctactaggcatccacgtgtggcagtctctgtgttagattct 646
Query: 181 ggggctcagagttagataaggcccgggcctgtcttgtgacttttcctgtgcagcagggga 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 645 ggggctcagagttagataaggcccgggcctgtcttgtgacttttcttgtgcagcagggga 586
Query: 241 tgcaggagctgtcagtggtcaccatacagtctgagtgccctgccactgagaggcactcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgcaggagctgtcagtggtcaccatacagtctgagtgccctgccactgagaggcactcaa 526
Query: 301 aaggcttaagtggaaaggggtgactcccagagcagaatccca----ccccaagatggggt 356
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 525 aaggcttaagtggaaaggggtgactcccagagcagaatcctaaggg----aaggtggggt 470
Query: 357 gccagatgaaggggaacagaagcatgtttaaaaggggagtgtctgggcagaaagatgttg 416
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 469 gccagatgaaggggaacagaagcatgtttagaaggggggtgtctgggcagaaagatgttg 410
Query: 417 gcaccaaacatctccttcagaaacctatagctgtccatcatgagcttaagccaatgggtt 476
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gcaccaaacatctctttcagaaacctatagctgtccatcatgagcttaagccaatgggtt 350
Query: 477 ctctgtctgttgaggaggtgggtcccttaagcaagaagcaaaattgcatcttagatacag 536
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
Sbjct: 349 ctctgtctgttgaggaggtgggtccctgaagcaagaagcaaaagtgcatcttagatactg 290
Query: 537 tcagggtaagtaaaccagagagtggcatgattaagagagatccatctccatatacaagaa 596
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tcagggcaagtaaaccagagagtggcatgattaagagagatccatctccatatacaagaa 230
Query: 597 tgagccctctgcttcattctgttctcggg 625
|||||||||||||||||||||||||||||
Sbjct: 229 tgagccctctgcttcattctgttctcggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
