BAC Information

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BAC

Clone NameMSMg01-205J07
Chromosome4 (Build37)
Map Location 62,693,976 - 62,804,722
singlet/doubletdoublet
Overlap geneZfp618, Ambp
Upstream geneLOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Downstream geneKif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205J07.T7 (MSMg01no205_j07.b1)MSMg01-205J07.TJ (MSMg01no205_j07.g1)
ACCAG389517AG389518
length727732
length of high quality
(start - end)
651 (46 - 696)308 (425 - 732)
definitionCHROMAT_FILE: MSMg01no205_j07.b1 PHD_FILE: MSMg01no205_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:29 2005CHROMAT_FILE: MSMg01no205_j07.g1 PHD_FILE: MSMg01no205_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,693,976 - 62,694,622)(62,804,415 - 62,804,722)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTTTGCACCAGAGAAAGAAAGGCTGTCCTAGCAAGGCTTCAGA
GTTACCTCAAACTTTGTATAATCTTTAGCTCCTTTTAAATGTTTTGTCTT
GTTTTTAACCCACTAAGGTGGTTGACGAAAGTGTAATGTATTTGGCAGTA
TGTTCAGGGTTGGTTTGTCAAGTGGATGACTGGCCCAGGAATATCACCAG
GAAGATGAAACTATCTAGGAGAGAATGGGAGGGCATGGTATCCAAATGTC
TTGCCTTTGCTTAGCAGGCAGTTTTGAGTGCTTGTGCTGTTTGATAGCCC
AGCCACAAGAATGGGAAGCACCAGGGAGGTTTGTGGCGGTGTAGAGATGG
GAGGACCTCGTCCATACACCCAAAGTATCCTTGTCAGCCCTTCACAGGTT
TGGGATGGGGGACCCTTATTCCATTGTAGGGCTATAGGTACCACTTAGCC
CCTCTGATTAGTGCCAGAGATAACCAAAACTGCAGAGACTCGGGTTCCTG
AACTGGACTAGTCCACCCAGTGTTTCCCTAGCCGATGGTAGGAAAGAGGG
TTCAGCCTTCAATTGTGCAAGTAAAGTGTTGGGACTCCCTGGCACCTGCT
CCACTATCTTTCTTAATCTGGGCTCAGGGTGTTGGAGGTTGAAGGCCTAG
CAGGCATCTTGCATCTGAAGTCACACT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATGTAGATGCAGGTGGCCTGG
GTCAGTCATATTCTGTTTGCTTGTTTGTTTCTGGGGACCCATCCAGTTTC
CCAGTCTGTAGAAGAAGGACCTGCAATCTAGATGTCAGGCTCCCCTGGCC
CTGTCTATTGTCCTGTGCATGTCCCAACAGCAGGTGCAAGACTAACTCTC
CATGTCCCTCTTTCCTCCACAGCGGCCTGCAATCTCCCCATAGTCCAAGG
CCCCTGCCGAGCCTTCATAAAGCTCTGGGCATTTGATGCAGCACAAGGGA
AGTGTATTTTATTCCACTACGCGCGCTGCAAAGGCAACGGCAACAAATTC
TACTCTGAGAACCAATGCAAAGAGTACTGTGGAGTCCCTGGTGATGGTAG
GAGGCCCTCGGGAGTCCAGGGAGGCAGGCGAGGGGGTCCTGGAGAGTAAA
CGCTAGGGACTGGAGAGTCAAATGATGGACTCTTTCCCAGGTGAGCAGCC
TGGTCCACTCTCTGGGCCTCAGCTTCCCACCTGGGAAATAGGCCAAGCCC
AGGAATATGCCCTCGCTGGTCCTAGCTGGACCAGAGAAGATGCAAAGGTC
ATTTAGCAAGTGACATTTCATTCTTACCCAAGGACCCATTCTAAGTCATT
CTCTATCTGCAGGGTACGAGGAACTAATACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_j07.b1 MSMg01no205_j07.b1 CHROMAT_FILE:
MSMg01no205_j07.b1 PHD_FILE: MSMg01no205_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:29 2005
         (651 letters)



>mm_chr4_62693772_62694822
          Length = 1051

 Score = 1181 bits (611), Expect = 0.0
 Identities = 638/647 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtttgcaccagagaaagaaaggctgtcctagcaaggcttcagagttacctca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtttgcacaagagaaagaaaggctgtcctagcaaggcttcagagttacctca 264

                                                                       
Query: 65  aactttgtataatctttagctccttttaaatgttttgtcttgtttttaacccactaaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactttgtataatctttagctccttttaaatgttttgtcttgtttttaacccactaaggt 324

                                                                       
Query: 125 ggttgacgaaagtgtaatgtatttggcagtatgttcagggttggtttgtcaagtggatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggttgacgaaagtgtaatgtatttggcagtatgttcagggttggtttgtcaagtggatga 384

                                                                       
Query: 185 ctggcccaggaatatcaccaggaagatgaaactatctaggagagaatgggagggcatggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggcccaggaatatcaccaggaagatgaaactatctaggagagaatgggagggcatggt 444

                                                                       
Query: 245 atccaaatgtcttgcctttgcttagcaggcagttttgagtgcttgtgctgtttgatagcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atccaaatgtcttgcctttgcttagcaggcagttttgagtgcttgtgctgtttgatagcc 504

                                                                       
Query: 305 cagccacaagaatgggaagcaccagggaggtttgtggcggtgtagagatgggaggacctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 505 cagccacaagaatgggaagcaccagggaggtttgtggcggtgtagagctgggaggacctt 564

                                                                       
Query: 365 gtccatacacccaaagtatccttgtcagcccttcacaggtttgggatgggggacccttat 424
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtccatacagggaaagtatccttgtcagcccttcacaggtttgggatgggggacccttat 624

                                                                       
Query: 425 tccattgtagggctataggtaccacttagcccctctgattagtgccagagataaccaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccattgtagggctataggtaccacttagcccctctgattagtgccagagataaccaaaa 684

                                                                       
Query: 485 ctgcagagactcgggttcctgaactggactagtccacccagtgtttccctagccgatggt 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgcagagactcaggttcctgaactggactagtccacccagtgtttccctagccgatggt 744

                                                                       
Query: 545 aggaaagagggttcagccttcaattgtgcaagtaaagtgttgggactccctggcacctgc 604
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 745 aggaaagagggttcagccttcaattattcaagtaaagtgttgggactccctggcacctgc 804

                                                          
Query: 605 tccactatctttcttaatctgggctcagggtgttggaggttgaaggc 651
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tccactatctttcttaatctgggctcagggtgttggaggttgaaggc 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no205_j07.g1 MSMg01no205_j07.g1 CHROMAT_FILE:
MSMg01no205_j07.g1 PHD_FILE: MSMg01no205_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:29 2005
         (308 letters)



>mm_chr4_62804215_62804922
          Length = 708

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgtggagtccctggtgatggtaggaggccctcgggagtccagggaggcaggcgaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tactgtggagtccctggtgatggtaggaggccctcgggagtccagggaggcaggcgaggg 449

                                                                       
Query: 61  ggtcctggagagtaaacgctagggactggagagtcaaatgatggactctttcccaggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggtcctggagagtaaacgctagggactggagagtcaaatgatggactctttcccaggtga 389

                                                                       
Query: 121 gcagcctggtccactctctgggcctcagcttcccacctgggaaataggccaagcccagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcagcctggtccactctctgggcctcagcttcccacctgggaaataggccaagcccagga 329

                                                                       
Query: 181 atatgccctcgctggtcctagctggaccagagaagatgcaaaggtcatttagcaagtgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atatgccctcgctggtcctagctggaccagagaagatgcaaaggtcatttagcaagtgac 269

                                                                       
Query: 241 atttcattcttacccaaggacccattctaagtcattctctatctgcagggtacgaggaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atttcattcttacccaaggacccattctaagtcattctctatctgcagggtacgaggaac 209

                   
Query: 301 taatacgc 308
           ||||||||
Sbjct: 208 taatacgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)