BAC Information

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BAC

Clone NameMSMg01-205K22
Chromosome4 (Build37)
Map Location 136,357,053 - 136,449,502
singlet/doubletdoublet
Overlap geneEphb2, C1qb, C1qc
Upstream geneMyom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684
Downstream geneC1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205K22.T7 (MSMg01no205_k22.b1)MSMg01-205K22.TJ (MSMg01no205_k22.g1)
ACCAG389583AG389584
length754757
length of high quality
(start - end)		669 (74 - 742)345 (77 - 421)
definitionCHROMAT_FILE: MSMg01no205_k22.b1 PHD_FILE: MSMg01no205_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:36 2005CHROMAT_FILE: MSMg01no205_k22.g1 PHD_FILE: MSMg01no205_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,357,053 - 136,357,721)(136,449,158 - 136,449,502)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGACCAGGTTCCATTTTAGTAGAAGCCAGGTCTCCCAGGCGTCT
CTGCCATTGAACCTCCTAAGTGACCTGCCATCCTGGGACCCTCATGGAAC
AGAAGGGCACGCTGGCAGCTTCCATGATACTGAAATGGTCACTGTGGCAA
GGTGACTCAGAGAGAAAGTCATGTAAAGGCACAGCCTATCCTCTGTGAGG
CAGACTCCCTTGGCGTCCTATATCCTTCCAGGTCAAGGGAACATAGGGAT
AGCTAACTTGGAGGGGCAGCCATCCTGAGGAGGGTGTGAGTCTGGGTAAG
CTCACATTTCCCAAGGTCATGGCCACAAAAGCTCCTGGGATAGCATAGTG
GTGGGTGTGAGGAGCTGGCCCACGCCAGAGCTCCTGGCTCCCTCCATGGA
AGGCAGGCCTCGGGAGAAAAGGTGACACAGAGGCAGCAGGGGACTCAGCA
GTGATGACTACCACCTCCTGTCTACGCCACGCCAGGAGCAGGTGCGATTA
GGATCCTGTTAGCAGGACACTCCTGGGCAGGTGAGCACACTCCACACTCC
TGGCAGCTGCCTTAGCTCAGAGCACAGGAAGCAGACAGCGTGGGTGGTAG
GCGAAGGCCGCTCCCAGCTGCCCGGGGCCACTCACAGTGCTGTGCAATCT
TTGTCAGGTCCCTTTCCCTCTCTGGGCTCCAAATGTCCTTTTCAACCAAT
GTGA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACATCCAGTGGGGAGATCAGTC
TGCGGGGCAGTGACTGCGTCTCCTGCCCAGGGAGAGACCAGCAAGAAGGA
AAAGCAGAGGCTCTGTCTCTGATGCACCCATGCCAAGCAAGCTCACCCTG
GCACCCTTCCCTGAGCCTGACAACTGGAATGGGTACATGGATGTTTCTAG
ACTAAGGCCCACCACTTGACAATTTCATGCGAGGCTTGTTTCTGGAAAGC
TGCTGAACACAGGGGTCACCCAGCAACTGCACAGTGTGTGACTTAGGGCA
AGCCTCAGTTTCCTCTTCTGGAAGAGGGGCTGTAACTTCATCTCAGGGAG
ATAGAAGGCCATTGATTCTCACCCCACGGAGGATGCCATAGAATGATCAC
CCTGCCCCTAGGGACAGCTGTGCCCTGGGTTCAGGTCTACACCACACACA
CACACACACACACACACACACACCCTGGTGTTCTCAGGATGAAGGGACGG
CAGACACTTCCTCATTTTGGCACACATGACCTAGGGCCAGGGAAGGAAGG
GGTGGGTAGAGATATCACTGTGGTCAGCCTGGATCAGAACCTAAAAGAAA
GTGTCAAGTCAGGGAAAATTTCTGGAAAGGGGATGCAGGGTTAGGGTGTT
GTGCCCCACCCTCTTTTCATCCCACTTGCCTTACCTTCCCCCTATCCCCC
CTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_k22.b1 MSMg01no205_k22.b1 CHROMAT_FILE:
MSMg01no205_k22.b1 PHD_FILE: MSMg01no205_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:36 2005
         (669 letters)



>mm_chr4_136356853_136357921
          Length = 1069

 Score = 1263 bits (653), Expect = 0.0
 Identities = 665/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagaagccaggtctcccaggcgtctctgccattgaacctcctaagtgacctgccatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagaagccaggtctcccaggcgtctctgccattgaacctcctaagtgacctgccatcc 260

                                                                       
Query: 61  tgggaccctcatggaacagaagggcacgctggcagcttccatgatactgaaatggtcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaccctcatggaacagaagggcacgctggcagcttccatgatactgaaatggtcact 320

                                                                       
Query: 121 gtggcaaggtgactcagagagaaagtcatgtaaaggcacagcctatcctctgtgaggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggcaaggtgactcagagagaaagtcatgtaaaggcacagcctatcctctgtgaggcag 380

                                                                       
Query: 181 actcccttggcgtcctatatccttccaggtcaagggaacatagggatagctaacttggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcccttggcgtcctatatccttccaggtcaagggaacatagggatagctaacttggag 440

                                                                       
Query: 241 gggcagccatcctgaggagggtgtgagtctgggtaagctcacatttcccaaggtcatggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gggcagccatcctgaggagggtgtgagtctgggtaagctcacatttcccaaggccatggc 500

                                                                       
Query: 301 cacaaaagctcctgggatagcatagtggtgggtgtgaggagctggcccacgccagagctc 360
           |||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||
Sbjct: 501 cacaaaagctcctgggatagcatagtggtgggtgtgaggagctggttcaagccagagctc 560

                                                                       
Query: 361 ctggctccctccatggaaggcaggcctcgggagaaaaggtgacacagaggcagcagggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggctccctccatggaaggcaggcctcgggagaaaaggtgacacagaggcagcagggga 620

                                                                       
Query: 421 ctcagcagtgatgactaccacctcctgtctacgccacgccaggagcaggtgcgattagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcagcagtgatgactaccacctcctgtctacgccacgccaggagcaggtgcgattagga 680

                                                                       
Query: 481 tcctgttagcaggacactcctgggcaggtgagcacactccacactcctggcagctgcctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctgttagcaggacactcctgggcaggtgagcacactccacactcctggcagctgcctt 740

                                                                       
Query: 541 agctcagagcacaggaagcagacagcgtgggtggtaggcgaaggccgctcccagctgccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctcagagcacaggaagcagacagcgtgggtggtaggcgaaggccgctcccagctgccc 800

                                                                       
Query: 601 ggggccactcacagtgctgtgcaatctttgtcaggtccctttccctctctgggctccaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggggccactcacagtgctgtgcaatctttgtcaggtccctttccctctctgggctccaaa 860

                    
Query: 661 tgtcctttt 669
           |||||||||
Sbjct: 861 tgtcctttt 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no205_k22.g1 MSMg01no205_k22.g1 CHROMAT_FILE:
MSMg01no205_k22.g1 PHD_FILE: MSMg01no205_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:36 2005
         (345 letters)



>mm_chr4_136448958_136449702
          Length = 745

 Score =  652 bits (337), Expect = 0.0
 Identities = 343/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacatccagtggggagatcagtctgcggggcagtgactgcgtctcctgcccagggagag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 545 ctacatccagtggggagatcagtctgcggggcagtgactgcgtctcctggtcagggagag 486

                                                                       
Query: 61  accagcaagaaggaaaagcagaggctctgtctctgatgcacccatgccaagcaagctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 accagcaagaaggaaaagcagaggctctgtctctgatgcacccatgccaagcaagctcac 426

                                                                       
Query: 121 cctggcacccttccctgagcctgacaactggaatgggtacatggatgtttctagactaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cctggcacccttccctgagcctgacaactggaatgggtacatggatgtttctagactaag 366

                                                                       
Query: 181 gcccaccacttgacaatttcatgcgaggcttgtttctggaaagctgctgaacacaggggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcccaccacttgacaatttcatgcgaggcttgtttctggaaagctgctgaacacaggggt 306

                                                                       
Query: 241 cacccagcaactgcacagtgtgtgacttagggcaagcctcagtttcctcttctggaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cacccagcaactgcacagtgtgtgacttagggcaagcctcagtttcctcttctggaagag 246

                                                        
Query: 301 gggctgtaacttcatctcagggagatagaaggccattgattctca 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gggctgtaacttcatctcagggagatagaaggccattgattctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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