BAC Information

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BAC

Clone NameMSMg01-206G09
Chromosome4 (Build37)
Map Location 27,770,723 - 27,911,706
singlet/doubletdoublet
Overlap geneLOC100040691
Upstream genenone
Downstream geneTpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206G09.T7 (MSMg01no206_g09.b1)MSMg01-206G09.TJ (MSMg01no206_g09.g1)
ACCAG390028AG390029
length736745
length of high quality
(start - end)
233 (117 - 349)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no206_g09.b1 PHD_FILE: MSMg01no206_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:34 2005CHROMAT_FILE: MSMg01no206_g09.g1 PHD_FILE: MSMg01no206_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,770,723 - 27,770,955)(27,911,420 - 27,911,706)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAGA
AGCCATTTCAAAGTTCTGTGTCCAAAGAAGAGTACTGAATTTATGTTACC
ACCCTTCAAATTTCCTCCAACAAGGAAATTAATTTTATTGTATTGTCATC
CAACTGCTTCTCCTGCCAAATTTTGGGCATCTTCTTAGAGAGGACTTTTT
CATTTCCATCTGTTATTCAGAACTTGTACAAAACCTGTCATTTTTACATC
CAAAATTTAACCCAAACCAGACACTTGTTTTTCCTCTTGCTTTCCTTTCC
ATTCAACCACATGGTCCTTTGGGCTGTGGCCCTACAGAAACTGTGCTATA
TTTTGTTACCCCCCCCCCCCCTTTTTTCTTTTTTTTTTCAAATTCACATA
TCACCCCCCCCCAGAAAAATTTCTCCAACTGGCTTTGACAATGAAACCCT
TCATCCCTTTGCCAATCTTTGTTATATGATCCACATATTTTCTCTTTAGT
CACTTGAAGCTCCATCGGATCCTTGCGGCTATTTTTTAGTTTTCATAATT
TTGGCTAATAACAGTAGATAGATTTATTTATGTATGTTAGATTTATAGAT
CGATCGATTCTTTTTTTTTTTACTCCCCCCCCCACACCACTACTTCTTTT
TTTCTCCCCCCACTCTATTCCCTCCTCAATACCTCTACTTTCTCCCTTAC
TAATAACAACTTTCCCACTCTTTATATATATATCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCCAACAGCATATTATTTCATA
AAGAATCCCATCTCTCAGACTGAACCAAAAGTAAATGGCAAGAAAAAATA
TCAAAAGAGAAAATAAAACTTGGCAGTCTTTTTAAAGGAAAAGGCAAATA
AACCAAGAAATAAAACCAGGAAGAGAGAGTTTTTTCTGTTGGATTCTGTA
GTAAAGACAGTTATATGGCAGCCTGGAAGTAGGAATGAGGCAAACCATTA
CTAATCTGCTTGGATGGATATTTGTGTATGAATGGTTACAGCCAGGGTCA
TACGTTATTAAATTGTTTTATCTCCCCCCCCCCCTATAACAAATCATTTT
CTTTTCATGACCAGGCCCCCCCGCTAGAACAAAAAATAATTCTATTAACA
TACTGCAGAAAACCAAACAAATGTAAATAACATGTTAGTGAAACATATAC
TGATTGAAGAATTCTCAGAAATTGAACACTGTAAACTATAATTTCTGATA
CTGCAATATACAGGATGACTTATGTTCTTATCACACCACATCATTTCCTG
AGAAACTTTGCAGTATACTCATTTTCTTTTTACTTACTGAGGAAAATATT
ATGCTGCTAGAGAGACATTACTGAAAAGGAAAAAAAAACTTACTTTCTAC
ACAATATGACTCTCCATATGACGAAGAATATAAAGATTTCCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_g09.b1 MSMg01no206_g09.b1 CHROMAT_FILE:
MSMg01no206_g09.b1 PHD_FILE: MSMg01no206_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:34 2005
         (233 letters)



>mm_chr4_27770523_27771155
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaacaaggaaattaattttattgtattgtcatccaactgcttctcctgccaaattttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaacaaggaaattaattttattgtattgtcatccaactgcttctcctgccaaattttgg 260

                                                                       
Query: 61  gcatcttcttagagaggactttttcatttccatctgttattcagaacttgtacaaaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatcttcttagagaggactttttcatttccatctgttattcagaacttgtacaaaacct 320

                                                                       
Query: 121 gtcatttttacatccaaaatttaacccaaaccagacacttgtttttcctcttgctttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcatttttacatccaaaatttaacccaaaccagacacttgtttttcctcttgctttcct 380

                                                                
Query: 181 ttccattcaaccacatggtcctttgggctgtggccctacagaaactgtgctat 233
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccattcaaccacatggccctttgggctgtggccctacagaaactgtgctat 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no206_g09.g1 MSMg01no206_g09.g1 CHROMAT_FILE:
MSMg01no206_g09.g1 PHD_FILE: MSMg01no206_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:34 2005
         (287 letters)



>mm_chr4_27911220_27911906
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacccaacagcatattatttcataaagaatcccatctctcagactgaaccaaaagtaaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 487 aacccaacagcatattatttcataaagaatcccatctctcagactgaatcaaaagtaaat 428

                                                                       
Query: 61  ggcaagaaaaaatatcaaaagagaaaataaaacttggcagtctttttaaaggaaaaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggcaagaaaaaatatcaaaagagaaaataaaacttggcagtctttttaaaggaaaaggca 368

                                                                       
Query: 121 aataaaccaagaaataaaaccaggaagagagagttttttctgttggattctgtagtaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aataaaccaagaaataaaaccaggaagagagagttttttctgttggattctgtagtaaag 308

                                                                       
Query: 181 acagttatatggcagcctggaagtaggaatgaggcaaaccattactaatctgcttggatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acagttatatggcagcctggaagtaggaatgaggcaaaccattactaatctgcttggatg 248

                                                          
Query: 241 gatatttgtgtatgaatggttacagccagggtcatacgttattaaat 287
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 247 gatatttgtggatgaatggttacagccagggtcatacgttattaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)