BAC Information

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BAC

Clone NameMSMg01-206J20
Chromosome4 (Build37)
Map Location 154,069,713 - 154,070,243
singlet/doubletsinglet
Overlap genenone
Upstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2
Downstream geneB230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206J20.T7 (MSMg01no206_j20.b1)MSMg01-206J20.TJ (MSMg01no206_j20.g1)
ACCAG390165AG390166
length719743
length of high quality
(start - end)
526 (132 - 657)---
definitionCHROMAT_FILE: MSMg01no206_j20.b1 PHD_FILE: MSMg01no206_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:50 2005CHROMAT_FILE: MSMg01no206_j20.g1 PHD_FILE: MSMg01no206_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACGAATCCG
CGGAATTCCTTTTTTTCGAAAAAAAATGAGAGGCCAATGCTTTCACTCGA
GAGTTTGGAATGAAGATTTTCTCCATGAATGTCTGTCTGTCTATGTCTAA
ATATATAGATACGTATATATGCTTATTATAGAAGCTATCTATCTATCTAT
CTATCTATTTGCTATAGAGGACAATGGGAGGGAATAGAAAACATTAAAAA
ACCTTATCTTGTATTTTTATACAACATGTCTCTACTTATAGTTCATACAA
CTCATCAAATTAGCAAGTTTTTTATCCATCCATCAGCCATTCATCATTTC
CTTTCATTTTCTTCTTCCATTCAGCCACTTACCCACTTATCTATCATCCA
TCCATCTACCCACCCACCCATCCATCCACCTACCCATCTACCCACCCATC
CACCGTCCCATCATCCATCTGTCCATCCATCCATCCATCCATCCATCCAT
CCATCCATCCATCCATCCATCCATCCATCCATCTACCAAGCCAGGCATCC
ATCCATCTACCATGCTTCCATCCATCCATTCATCCATCTACCCATCCATC
TGTCCACCCACCCATTTACCCATCTACCCATCCACCCACCCATCTACTGT
CCTGTCCATCTGTCCATGCATGCATCCATCAAGTTAGGCATCCATCCATC
CATCCATCCATCCATCCAT
CCCCGATGAAGAGGGAGGCCGGGAGGNCGCCGGATCGGAACCCGANAGGN
GAANNANANAATTACCNGCAGCGGGGANGNGAAGNAANAANNANNNANAG
GAGGGAANAGGATTTTTTACCCGAAAAAGAAGGNGGGNGGGAGANGGGGA
AANNNNAAAAGGGANAGGGAGNAAAGAGNNGGNNANNNAGAAANNNGANA
NAGAAAAGGGGAAGAAAAGGGAGAGAAGAAAAAGGGAAGGAAGAAAGATT
TTTNNGGGAGAGACGGAGGAGAGAGGAGAAGGNGAGAGAAGAGGGGGGCA
AAGGAGAGGANNATTTAAATAATTTAAGNGNGANAGAGGGGAAAGAAAGG
GGATTTTTTTTTCCCCCCCCCCCCCCCACGTGACAGAGCTGTTCATGTGT
TGGGGAGAGAGCCCCCCAATAAAAAAAAAAACTTGGTGGGGGGGGTGGTG
TTTCCCCCCTACATAAATTGCTCTTTGCAAACGAGACTATCCTTAACCTC
TGTGACCCCCTCCGACCCCTTCGTCTCCGCTTCTGATCTTCCCACCTCCT
CGGTTCTCCCCTTTCCCCCCGATTCCTCTGCTGCGCCCTCTTAGATTTCC
CCACCTTATCAATTTTCAGCCCTACCCCCGCCAGCCCCGCGCGGCTGCCC
CCTTTTTTTTTTTTTTTTTTCCCCAGACGCAGCGCCGCCTTTCTTGTCTG
CCCCGCTTTTTTTTTATCTTCCCCCACCTCCTTACTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_j20.b1 MSMg01no206_j20.b1 CHROMAT_FILE:
MSMg01no206_j20.b1 PHD_FILE: MSMg01no206_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:50 2005
         (526 letters)



>mm_chr4_154069683_154070609
          Length = 927

 Score =  833 bits (431), Expect = 0.0
 Identities = 501/547 (91%), Gaps = 37/547 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtctgtctatgtctaaatatatagatacgtatatatgcttattatagaagctatcta 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgtctttctatgtctaaatatatagatacgtatatatgcttattatagaagctatcta 502

                                                                       
Query: 61  tctatctatctatctat--------------------ttgctatagaggacaatgggagg 100
           |||||||||||||||||                    |||||||||||||||||||||||
Sbjct: 501 tctatctatctatctatctatctatctatctatctacttgctatagaggacaatgggagg 442

                                                                       
Query: 101 gaatagaaaacatt-aaaaaaccttatcttgtatttttatacaacatgtctctacttata 159
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatagaaaaaattaaaaaaaccttatcttgtatttttatacaacatgtctctacttata 382

                                                                       
Query: 160 gttcatacaactcatcaaattagcaagttttttatccatccatcagccattcatcatttc 219
           |||||||||||||||||||||||||||   || |||||||||||||||||||||||||||
Sbjct: 381 gttcatacaactcatcaaattagcaagcaattgatccatccatcagccattcatcatttc 322

                                                                       
Query: 220 ctttcattttcttcttccattcagccacttacccacttatctatcatccatccatctacc 279
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcatttccttcttccattcagccacttacccacttatctatcatccatccatctacc 262

                                                                       
Query: 280 cacccacccatccatccacctacccatctacccacccatccaccgtcccatcatccatct 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacccacccatccatccacctacccatctacccacccatccaccgtcccatcatccatct 202

                                                                       
Query: 340 gtccatccatccatccatccatccatccatccatccatccatccatccatccatccatcc 399
           ||||||||||||||||||||||||||||||||||||||||||||||| |||         
Sbjct: 201 gtccatccatccatccatccatccatccatccatccatccatccatctatc--------- 151

                                                                       
Query: 400 atctaccaagccaggcatccatccatctaccatgcttccatccatccattcatccatcta 459
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 -------aagccaggcatccatccatctaccatgcttccatccatccattcatccatcta 98

                                                                       
Query: 460 cccatccatctgtccacccacccatttacccatctacccatccacccacccatctactgt 519
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tccatccatctgtccacccacccatttacccatctacccatccacccacccatctactgt 38

                  
Query: 520 cctgtcc 526
           |||||||
Sbjct: 37  cctgtcc 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 17
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space:   473172
Effective search space used:   473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)