Query= MSMg01no206_n20.b1 MSMg01no206_n20.b1 CHROMAT_FILE:
MSMg01no206_n20.b1 PHD_FILE: MSMg01no206_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:10 2005
(508 letters)
>mm_chr4_15363525_15364433
Length = 909
Score = 611 bits (316), Expect = e-179
Identities = 352/364 (96%), Gaps = 2/364 (0%)
Strand = Plus / Minus
Query: 1 tatatatatatattcaattttgtttactgccaaaatactgaatcagaattttaagtttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tatatatatatattcaattttgtttactgccaaaatactgaatcagaattttaagtttaa 305
Query: 61 gagggaaagtctaacatgatataatttttctcttctccatct-ctttttctttgtgttgc 119
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 304 gagggaaagtctagcatgatataatttttctcttctccatctcctttttctttgtgttgc 245
Query: 120 ctccattactactgcatgctatgaggattagggcaacatgagtacttttc-tttttcttt 178
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 244 ctccattactactgcatgctatgaggattagggcaacatgagtacttttctttttttttt 185
Query: 179 tttttttttctttttcttttttggttttttgagacagggtttctctgtatagccctgact 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 184 tttttttttctttttcttttttggttttttgagacagggtttctctgtatagccctggct 125
Query: 239 gtcctggaagtcactttgtagaccaggctggccttgaactcagaaatccgcccgcccctg 298
|||||||||||||||||||||||||||||||||| |||||||||||||| || ||| |||
Sbjct: 124 gtcctggaagtcactttgtagaccaggctggcctcgaactcagaaatccacctgcctctg 65
Query: 299 cctcccgagtgctgggattaaaggcgtgcaccaccacgcccggctgtacttttcttttct 358
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 64 cctcccgagtgctgggattaaaggcgtgtgccaccacgcccggctgtactttccttttct 5
Query: 359 taac 362
||||
Sbjct: 4 taac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_n20.g1 MSMg01no206_n20.g1 CHROMAT_FILE:
MSMg01no206_n20.g1 PHD_FILE: MSMg01no206_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:10 2005
(280 letters)
>mm_chr4_15218999_15219672
Length = 674
Score = 460 bits (238), Expect = e-134
Identities = 267/280 (95%), Gaps = 6/280 (2%)
Strand = Plus / Plus
Query: 1 tttcatattaaagtcatctgggaaatcaaatcacttgctatgcccggcccttctttctag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tttcatattaaagtcatctgggaaatcaaatcacttgctatgcctggcccttctttctag 260
Query: 61 cacctaggtgtgggtgccagccaattttgaagtttactgatgatttaaaacctgctaaga 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 cacctaggtgtgggtgccagccaattttgaagtttactgctgatttaaaacctgcta--- 317
Query: 121 gggagtgactgaagtttgtttaagcagtgagggaaattgtcatttatattttatgttact 180
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 ---agtggctgaagtttgtttaagcagtgagggaaattgtcatttacattttatgttact 374
Query: 181 atatgaacttattgggttatgcccttagcttatcttgaagataacagtatagattactgg 240
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 375 atatgaacttactgggttatgcccttagcttatctcgaagataacagtatagattactgg 434
Query: 241 aacaatggccaggaaactgtgccataacacagctcatttc 280
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 435 aacaatggccaggaaactgtgccataacacagcttatttc 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 674
Length adjustment: 9
Effective length of query: 271
Effective length of database: 665
Effective search space: 180215
Effective search space used: 180215
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
