CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAAACCAAATGGCTGAGAAGCACCTGAAAAAATATCT
TCAGACTATTTCTATACATACTATCTTTCTACATTTCTTTTAAACTTGAG
GAGATTTATGTGAGCTGAATCTTTTGTGAAATATAATATATGCATGTTTT
GTCTGTAGACTTCTTAAATGTTCATTTATTTATGGTTATTAAAATATAGG
GTTTTATTGGTTTCAATCTTTACGTGAAGGTTGGGATTTATGTCTATCAC
ATACTTGCATTAAGCATTTCAAAAAGGTATACATTTTTTTAATTATATGA
CAAACACCTCCCCCTTTCTCTCCACTTGCTCCCTGAACCTTAGGATAGGC
TTAGAAAATCTTCCTTAACACTGAGTCCTCTGACTTCCCACCATTGTCAA
ATGTCCAATGTGTCTCTTAAACTCATAGAATGCATTTATTTTTCTACCTA
CATCACAGATCATCGTTACTGCACCTTTGTATTCAGTCACAGAAATCAGC
TAATAAAGGACAGTTTTGTAGCTTTTTATCAAAAGAGTCATGAATATTCC
TGTCTTTTCCTTTTCCATATAATTGTCAAAATTGGTTGAGAACTGTAGTT
GGATTTTGGTTGGTATAAATCTATTAATTATAGAACAATGTTGTTTTTAT
TTTTCAATGCCAT

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATT
AAAAATTCAGGTGACAGCAGATTCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTACGCTCATAGCAGTCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATACCCAAGATATTATATATATATAATT
TGCTAAACACATGAAN

Query= MSMg01no208_j21.b1 MSMg01no208_j21.b1 CHROMAT_FILE:
MSMg01no208_j21.b1 PHD_FILE: MSMg01no208_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:29 2005
         (669 letters)



>mm_chr4_27047254_27048321
          Length = 1068

 Score = 1154 bits (597), Expect = 0.0
 Identities = 655/685 (95%), Gaps = 22/685 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacctgaggaa-accaaatggctgagaagcacctgaaaaaatatcttcagact 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatatcttcagact 245

                                                                       
Query: 64  atttctatacatactatctttctacatttcttttaaacttgaggaga-tttatgtgagct 122
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 246 atttctatacatactatctttctacatttcttttaaacttgagg-gattttatgtgagct 304

                                                                       
Query: 123 gaatcttttgtgaaatataatatatgcatgttttgtctgtagacttcttaaatgttcatt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaatcttttgtgaaatataatatatgcatgttttgtctgtagacttcttaaatgttcatt 364

                                                                       
Query: 183 tatttatggttattaaaatatagggttttattggtttcaatctttacgtgaaggttggga 242
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 365 tatttatggttactaaaatatagggttttattggtttcaatctttacgtgaaggttgaga 424

                                                                       
Query: 243 tttatgtctatcacatacttgcattaagcatttcaaaaaggtatacatttttttaattat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttatgtctatcacatacttgcattaagcatttcaaaaaggtatacatttttttaattat 484

                                                                       
Query: 303 atgaca-----------------aa-cacctccccctttctctccacttgctccctgaac 344
           ||||||                 || |||||||||||||||||||| ||| |||||||||
Sbjct: 485 atgacatgtgttttctggaacacaagcacctccccctttctctcca-ttgttccctgaac 543

                                                                       
Query: 345 cttaggataggcttagaaaatcttccttaacactgagtcctctgacttcccaccattgtc 404
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 544 cttaggataggcttagaaaatcttccttaagactgagtcctctgacttcccaccattgtc 603

                                                                       
Query: 405 aaatgtccaatgtgtctcttaaactcatagaatgcatttatttttctacctacatcacag 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaatgtccaatgtgtctcttaaactcatagaatgcatttatttttctacctacatcacag 663

                                                                       
Query: 465 atcatcgttactgcacctttgtattcagtcacagaaatcagctaataaaggacagttttg 524
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atcatcattattgcacctttgtattcagtcacagaaatcagctaataaaggacagttttg 723

                                                                       
Query: 525 tagctttttatcaaaagagtcatgaatattcctgtcttttccttttccatataattgtca 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tagctttttatcaaaagagtcatgaatattcctgtcttttccttttccatataattgtca 783

                                                                       
Query: 585 aaattggttgagaactgtagttggattttggttggtataaatctattaattatagaacaa 644
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaatacgttgagaactgtagttggattttggttggtataaatctattaattatagaacaa 843

                                    
Query: 645 tgttgtttttatttttcaatgccat 669
           |||||||||||||||||||||||||
Sbjct: 844 tgttgtttttatttttcaatgccat 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space:   697222
Effective search space used:   697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)