BAC Information

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BAC

Clone NameMSMg01-211P10
Chromosome4 (Build37)
Map Location 82,997,969 - 82,998,254
singlet/doubletsinglet
Overlap genenone
Upstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik
Downstream geneSnapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211P10.T7 (MSMg01no211_p10.b1)MSMg01-211P10.TJ (MSMg01no211_p10.g1)
ACCAG393495AG393496
length730731
length of high quality
(start - end)
314 (46 - 359)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no211_p10.b1 PHD_FILE: MSMg01no211_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:35 2005CHROMAT_FILE: MSMg01no211_p10.g1 PHD_FILE: MSMg01no211_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGACTAGGGGGTTGCATCGACCCCCCGGTGTGGCCCCCTGGAC
GCTACTGGATACCACTGAGGAATCATAACAGGGGCCCTGACCCTTAGGAG
TGTTTCCTCGCTTAAGGGAAATTAGGTCCCATGATGATGATGGCTTCCAG
TATGCCTGTCCAGTGGTCTCACATCCCCATTTGCCGCAGTAGCCCTCTCT
CGGCCCTCCACACCCTGTTAGCACAGTATGGCCGGGGCAAACATAGAAAT
CATATAGTCTTGTCCTTTTTCTTCCCCCCGGAGAGCGGCAACCATCTCCA
ATAGAGGGTTTTTTTTCATCCCACCCCCCTCCAACTAAATCACACAAGTC
AAAATATAGTTTAGGGAAGGTGTCTGTAATCGTCCCCAGGAGGGAGGTAG
CGTTAGCTGTTTGTCCTGTCATTAGGTTGGTAACTCTCCAAGTGACATTG
AAGACCTGGTGAGGGCTGTCACGTTGTACCGAGGCTCCTGCCCTCACCAA
GATCCCTATATCTATTATTGGGCCCCTTGGTTCTAATCTCATCTTTAATG
GGCTTTGAGAACGCTGGACCTTTTTTGCTGCTCCGGTCGGTATATTTGCC
GTCGTCTTTACGCGTGCGCTTTGCATCCCTTTATAGCTTTTTTCTACCTT
GACAGCCGCGCGCGTTGTTCCTTTGACTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATCCCAGGGACCTATAGGTGGAAA
CAGAGAACTGACTCCCAAAAGTTCCCCTCTGACTTCCCCAGGTGTGCACG
TCCTTACACATACACACACATACATACACAACACACAAAATATAATAAAA
ATGGTGTACATGAAGCAGAGACATGCTTTGTATCTTGATAGTGTAAGAAG
CACTCCTTAAAGAAAAGAGGAATTAGAAATACAAAATTGGGAGTGACAAA
GAATATTTAGAGAATAAATCACTATTATTTACCAGGGATGGGCAATGCGG
AGCCCTTTACTTTTCTGTTCACCCACTTCGNCCCACTTTTTTCATAACTG
TAAACTGGTTACTAGCTGGCTTCCCTAAAATAAAAATATATCCCCGTGAT
ACTCAGCACCCACAGAGGCCTGATCGACTGAAGTGCCAGGCTATCTAAAT
GTCATTATTAGCTTTCTGTTGCCATGTCAAATACCTGAAATAAGTAATTT
AGGGAAGAGAGATTTATTTTCAGCCCATTGTCGTGTACTCAACTGTACAA
TATGTGGGTTCTGGTCTGTGATAGCTGTTCCTGGTTGTCAACTTGACTAC
ATCTGGAATGAACTACACTCCAGAAACGGAGGGTACACCTGAAATCCGGG
TCTTGATTTTGGCACACCCCTTCTCTTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_p10.g1 MSMg01no211_p10.g1 CHROMAT_FILE:
MSMg01no211_p10.g1 PHD_FILE: MSMg01no211_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:36 2005
         (287 letters)



>mm_chr4_82997769_82998456
          Length = 688

 Score =  458 bits (237), Expect = e-133
 Identities = 275/291 (94%), Gaps = 11/291 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcccagggacctataggtggaaacagagaactgactccca-aaa--gttcccctctga 57
           |||||||||||||||||||||||||||||||||||||||||| |||  ||   |||||||
Sbjct: 201 aatcccagggacctataggtggaaacagagaactgactcccacaaattgt---cctctga 257

                                                                       
Query: 58  cttccccaggtgtgcacgtccttacacatacacacacatacatacacaacacacaaaata 117
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 258 cttccccaggtgtgcacgtccttacacaaacacacacatacatacacagcacacaaaata 317

                                                                       
Query: 118 taataaaaatggtgtacatgaagcagagacatgctttgtatcttgatagtgtaagaagca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taataaaaatggtgtacatgaagcagagacatgctttgtatcttgatagtgtaagaagca 377

                                                                       
Query: 178 ctccttaaagaaaa-gaggaattagaaatacaaaattgggagtgacaaagaatatttaga 236
           ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 378 ctccttaaaaaaaaagaggaattagaaatacaaaattgggagtgagaaagaatatttaga 437

                                                              
Query: 237 gaataaatcact--attatttaccagggatgggcaatgcggagccctttac 285
           ||||||||||||  |  | ||||||||||||||||||||||||||||||||
Sbjct: 438 gaataaatcactgca--aattaccagggatgggcaatgcggagccctttac 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)