BAC Information

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BAC

Clone NameMSMg01-212D14
Chromosome4 (Build37)
Map Location 13,812,104 - 13,812,382
singlet/doubletsinglet
Overlap geneRunx1t1
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212D14.T7 (MSMg01no212_d14.b1)MSMg01-212D14.TJ (MSMg01no212_d14.g1)
ACCAG393660AG393661
length730734
length of high quality
(start - end)
310 (48 - 357)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no212_d14.b1 PHD_FILE: MSMg01no212_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:55 2005CHROMAT_FILE: MSMg01no212_d14.g1 PHD_FILE: MSMg01no212_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCAAGGTGGCCTATTCTGTTTATAATACTCTAGGGTTTCT
TTGGATAATACCACCCAAATCTTTCATATTCTTCCCTTAAACCAGTTCCA
AAGGCCTAAAGACAACATAGACAACTTGATTACTAAGAAACTACCCTACT
TCTCAGTGCCAATTTCCCAAGCCTATTACTTTTTTTCATTATTGTGAGGA
CACACCTGACAAGAAGCAGCTTAAGAGAGGAAGGATTTATTTGGGCACAT
GGTTTGAGAGCACAGTTTATCAACTGGGCACTGAAGAGGCATGGCAACGA
TACCTCTGTGGTTGTTTACCCCAACGTCCCGCTTACACTTCATAGAAGTC
AGGAAGCAGAAAGCCATGGCTGACATCATCCACCTGCTGAAGAGTCTTAT
CCTTCAATATGGCATGTACAGGTAATTACTACTGTGCAAAATATTCCAGG
GATTTCCAGTCACATAAATGAACCCTTCCACTGAGCTCTATCTCAGTGCA
GACTTGGATGTAATTGTTCTTTAGTTTTCTGTTTCTCTATATAAACAGAA
AACAAATCTGCTGAATCCTTTCTCAAAGCTAAATGCCTTCATTTTTGTCA
TTAATTGTATTTACCTATATTTATTTGCTTCTTCATTAGGTATTATGACA
CAGTCTTCATGTAAAGTTATCTTTGCTTTG
CGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGTGTGAGTTCAAGTCAGGGTG
TTGCTTCTATAGAGTTTTGTTTTTTTAGAACTAGTAGTAGAGCCAGCCCT
TTACATTTGTGGAATTTTAGGTAGAACAATTTTACTTAAATGTCTTAAGC
ATCAGTTACAGATAAGACCTAGTAAAACGGACAATAATTCCAGAGAAAAC
CTTTTGTCTCTCAGAAAAAGAATTTTCGACATTGATGACTAGGAGGGGTG
CCTTTTGCTGAAAGCATGGTCTGATTATTCTCTGTATTTCTAAATAACAA
GATAATTTAAAGTANNCTCNTGNCCGAGGGCCCAAGAGAATTACTGATAA
GATAAGAAGGATCTGAATCTTAAATCCATTNCAACAGCATCCGGAAGCGT
CCATCCATTCTTGCTTTATCTGTATATAAAGATATGCCTAGTGTATTTTG
CAAAAAGGAACTTTGTATCCAGCCTTAGATTCGTCACCTGCATTCCAGTG
CTGCAGTTTTGCCCAATTGCTGTGCTAAAGCAACGTGATCAATAGCGACT
CTTTTGGCTTATGGTTTCCTCGGCATATGAGCGGAGAGGAATGGTTGCAA
GGGAAGGAAACTGACAGCTCACATCCTCGACCGCAAGCTTGAGGCCGAGA
ATGACACTTAGAATTCGGGGGAGGGCTTAAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_d14.g1 MSMg01no212_d14.g1 CHROMAT_FILE:
MSMg01no212_d14.g1 PHD_FILE: MSMg01no212_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:55 2005
         (281 letters)



>mm_chr4_13811904_13812584
          Length = 681

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtgtgagttcaagtcagggtgttgcttctatagagttttgtttttttagaactagta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acagtgtgagttcaagtcagggtgttgcttctatagagttttgtttttgtagaactagta 260

                                                                       
Query: 61  gtagagccagccctttacatttgtggaattttaggtagaacaattttacttaaatgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagagccagccctttacatttgtggaattttaggtagaacaattttacttaaatgtctt 320

                                                                       
Query: 121 aagcatcagttacagataagacctagtaaaacggacaataattccagagaaaaccttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcatcagttacagataagacctagtaaaacggacaataattccagagaaaaccttttg 380

                                                                       
Query: 181 tctctcagaaaaagaattttcgacattgatgactaggaggggtgccttttgctgaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctcagaaaaagaattttcgacattgatgactaggaggggtgccttttgctgaaagca 440

                                                  
Query: 241 tggtctgattattctctgtatttctaaataacaagataa 279
           ||| | ||||||||||||| |||||||||||||||||||
Sbjct: 441 tggccagattattctctgtttttctaaataacaagataa 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)