BAC Information

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BAC

Clone NameMSMg01-212I07
Chromosome4 (Build37)
Map Location 77,214,053 - 77,214,336
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212I07.T7 (MSMg01no212_i07.b1)MSMg01-212I07.TJ (MSMg01no212_i07.g1)
ACCAG393845AG393846
length703757
length of high quality
(start - end)
291 (126 - 416)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no212_i07.b1 PHD_FILE: MSMg01no212_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:18 2005CHROMAT_FILE: MSMg01no212_i07.g1 PHD_FILE: MSMg01no212_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTTACGAATACCGAATGGCTGAGAAGTACCTGAAAAAATG
TTCAAAATCCTTACTCATCACCCAAATGCAAATCAAAACAACCCTGAGAT
TCCACTTCACTCCAATCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCAAGGATGTGGAGAAAGAGGAATACTCCTCCATTGTTGGTG
GGATTGCAAGCTTGTACAACCACTGGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTCACCCATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCACTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTTAAAAAAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGATGTAACCCAATCACAAAG
GAACTCGCACAGTATGTACTCCCTGACACGCGGATTATTACCCCAGACAC
TTATGATACCTCAGATCTCCGCACCAATTTTGCTAAACGCATGATATTCA
AGA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGAGGAATACGCAGATGAATCTCG
AGTAGTTTGAGGACAACCTGCTTTGTATAGAAAATTCTAGGCCAAACACG
GCCACATAATAATATTGTGTAAAAGCAAACAAACACAATATTTAAATACA
TGGCTCAATTATATTGTGAAATCCTATAAACTGCTTATAGATTTAAATTA
ACTCTCCAAAGTATCTTGAGTACTTTAAGTTAAAAAGTAGTTGAAAATGT
GATTTTAAAACTAATAAATAACTGTATTTCACATGTAATAATTTAAAAGG
GTTAACTATATATGTGCGCCCCCCCCCGTGTGTGTGTGTGTATGTGTGTG
TGTCTCCTATTTCCCCCCCAAAAAAAAAAAAATTCCTATCACTTTGCCAC
CTCCCTACTCCTTTTTTTCCCTCACTCTTTTATATTTACTACTCTCTACC
CCTACTACTTTTCACTATACAATATTTTAAATCTTTTTTTAGACATATTT
ATCCATATAACACCTAATCCCCTCCTTTCCGCTCTCATTTTATCTCCCCC
CCCTTTAATAATAAATAAGCCCCCACCCCATACCCCCACTATTCCTACCC
CCCCCACTTACCTCTTTCTTCCCTTCCACTTCCATTTAGTTTATTCTTCC
TAGCCAAATATTTTCCTTTCAATAACCAACCATTTTACCCCTCTATATTT
CCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_i07.g1 MSMg01no212_i07.g1 CHROMAT_FILE:
MSMg01no212_i07.g1 PHD_FILE: MSMg01no212_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:18 2005
         (284 letters)



>mm_chr4_77213853_77214536
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaggaatacgcagatgaatctcgagtagtttgaggacaacctgctttgtatagaaaat 60
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 484 aggaggaatacgcagatgaatctcgagtagtttgaggacaatctggtttgtatagaaaat 425

                                                                       
Query: 61  tctaggccaaacacggccacataataatattgtgtaaaagcaaacaaacacaatatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tctaggccaaacacggccacataataatattgtgtaaaagcaaacaaacacaatatttaa 365

                                                                       
Query: 121 atacatggctcaattatattgtgaaatcctataaactgcttatagatttaaattaactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 364 atacatggctcaattatattgtgaaatcctataaactgcttatagatttaaattacctct 305

                                                                       
Query: 181 ccaaagtatcttgagtactttaagttaaaaagtagttgaaaatgtgattttaaaactaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ccaaagtatcttgagtactttaagttaaaaagtagttgaaaatgtgattttaaaactaat 245

                                                       
Query: 241 aaataactgtatttcacatgtaataatttaaaagggttaactat 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaataactgtatttcacatgtaataatttaaaagggttaactat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)