BAC Information

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BAC

Clone NameMSMg01-213C06
Chromosome4 (Build37)
Map Location 16,422,536 - 16,422,829
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213C06.T7 (MSMg01no213_c06.b1)MSMg01-213C06.TJ (MSMg01no213_c06.g1)
ACCAG394239AG394240
length766747
length of high quality
(start - end)
318 (30 - 347)293 (63 - 355)
definitionCHROMAT_FILE: MSMg01no213_c06.b1 PHD_FILE: MSMg01no213_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:06 2005CHROMAT_FILE: MSMg01no213_c06.g1 PHD_FILE: MSMg01no213_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGTTCCCCA
TTTTTAAGTACATTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTT
TGTATATTCCATTGATCTACATGACTGTCTCTATACCAATACCATGCAGT
TTTCATGAAGATTGCTTTGCAATACAGCTTGGGATCAGGGATGTTGATTC
TCTCAGAACTTCTTTTATTATTGAGAATAGTTTTCCCAATCCTTGGTTTT
CGCTTATTACACATGAATATTCAGATTGCTCTTTCTAACTCTATGAAGAA
TTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTTCTCTTG
TTTTTATAGCCTACACCCACCCCTACCAATCCATGAGCATGAAAGATCTT
TCCATCCCCCGACACCTTTGATTTCTTTCTTCATAGACATGAAGTTCTTG
TCATACAGATCTTTTCACTTTCTTGGTTAGAGTCACACCAAGGTATTTTA
TATTGTTTGTGACTATTTGTGAACGGTGTTGTTTTATGGCGAAATGGTTT
ATAGATATTCTGTTGAATCCATTTTGTACTTCTGAATACATTTAATGTAT
GTTGTCATTCCATGAACTAATATGTTTCCCCAAAATATTATTCAAGTTCA
TACATTATTGCTCTAGGGTCCAAGTATTCTATTAGGCGACCATTTCTACA
AAAAAGAATTTTTTTTCTCCGTCTTTTTTTCTATTTTTAAAAAAAATTTT
TTTTCATATTCAATTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTCTTATTGAAAGATAATAATAACTTTTGTGTTGAAGC
TCTTCAGTGACTTCCTTGCTACAGCATAATGAAGAGATTTAGAGATACTT
CTAAAGTACAATGAACACAATTTGACATATAAAGTAGAGAGGAAAGAGAA
AATAAGACATGTTAAAGATAATCTTGAAATATGAGAGAAATTTTAAAAGA
TCACACTTGTAACAGAAGTAAGAGAAGGCAGGTTCAATAGAAGACCTGCT
GGGTTTAGAGCATGGTAAATATCAGAAGAGAGGAGCAGAAGGTAAAAACT
GGAGACAGATCTCTTGCCGAAGCCATGGAGATGAGTCAAATTCTCAGGAA
TATCTATTGACCCCCACCCGAGAAATGACGGAACATGATAGAGTAACAAC
ATGTAAGACATTATGTAAGTTAAAGGTACTATGAACAATACAAAAAAGAG
AAAACCCAGGCAAGTTATTTGAATGTGAAATAAACTTGCAGTGTGTCACC
TATTAGTGAACAGAAAATACTGTTCCTAGTAACATATTTTGAAAACCTGG
ATGAATGATAAACAAAGCCTCTAGTGGTTTATGAATATTTTTTATGAAAT
TGAACTTTCCTTTCTTGAATTTCCGCAATTAAGTTTCATTTCCATCCTTT
ATTCCCTTTTTACTTATTACATACTAACCATTTGACCCTCATATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_c06.g1 MSMg01no213_c06.g1 CHROMAT_FILE:
MSMg01no213_c06.g1 PHD_FILE: MSMg01no213_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:06 2005
         (293 letters)



>mm_chr4_16422336_16423029
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%), Gaps = 1/294 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcttattgaaag-ataataataacttttgtgttgaagctcttcagtgacttccttgcta 59
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 494 ctcttattgaaagtataataataacttttgtgttgaagcttttcagtgacttccttgcta 435

                                                                       
Query: 60  cagcataatgaagagatttagagatacttctaaagtacaatgaacacaatttgacatata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cagcataatgaagagatttagagatacttctaaagtacaatgaacacaatttgacatata 375

                                                                       
Query: 120 aagtagagaggaaagagaaaataagacatgttaaagataatcttgaaatatgagagaaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aagtagagaggaaagagaaaataagacatgttaaagataatcttgaaatatgagagaaat 315

                                                                       
Query: 180 tttaaaagatcacacttgtaacagaagtaagagaaggcaggttcaatagaagacctgctg 239
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 314 tttaaaagatcacacttgtaacagaagtaagagaaggcagggtcaatagaagacctgctg 255

                                                                 
Query: 240 ggtttagagcatggtaaatatcagaagagaggagcagaaggtaaaaactggaga 293
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggtttagagcatgggaaatatcagaagagaggagcagaaggtaaaaactggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space:   194540
Effective search space used:   194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)