Query= MSMg01no213_h22.b1 MSMg01no213_h22.b1 CHROMAT_FILE:
MSMg01no213_h22.b1 PHD_FILE: MSMg01no213_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:31 2005
(670 letters)
>mm_chr4_53662655_53663724
Length = 1070
Score = 1170 bits (605), Expect = 0.0
Identities = 657/689 (95%), Gaps = 23/689 (3%)
Strand = Plus / Minus
Query: 5 gaattctaccacacttgcgctgtttttactgttcactttcagatcatatgatctgataaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaattctaccacacttgtgctgtttttactgttcactttcagatcatatgatctgataaa 748
Query: 65 tggaggcccttcaactccagatctcatgctagaacaggaacatgacaatttaaatagaag 124
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 747 tggaggcccttcaaatccagatctcatgctagaacaggaacgtgacaatttaaatagaag 688
Query: 125 aatttgaagataaagaagtgtgacaagaatcactgtatggttttaccaagggctattttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aatttgaagataaagaagtgtgacaagaatcactgtatggttttaccaagggctattttg 628
Query: 185 ttgttgttgtttccaattatattagcccaacttaaggactttaatatggtatgtttaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttgttgttgtttccaattatattagcccaacttaaggactttaatatggtatgtttaaaa 568
Query: 245 atagtgtgactaaaagaattgttttccccagatttataaaaattcaccactacctactaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atagtgtgactaaaagaattgttttccccagatttataaaaattcaccactacctactaa 508
Query: 305 atactttactacctaaattattcttcaaggttatccacattattttgtcagtaagcaagc 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atactttactacctaaattatacttcaaggttatccacattattttgtcagtaagcaagc 448
Query: 365 atttgaagtaggcccatagaaacttatgacctggctcagatactgaagagcagctaaaat 424
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atttgaagtaggcctatagaaacttatgacctggctcagatactgaagagcagctaaaac 388
Query: 425 aaactgcccataagcatgtgaaaatgtagcttatttaaactgaacattaaagaaaaacag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaactgcccataagcatgtgaaaatgtagcttatttaaactgaacattaaagaaaaacag 328
Query: 485 aattaaaataatcaattcctgaccccaaccacaagtagatgctttaaataagtgaacata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aattaaaataatcaattcctgaccccaaccacaagtagatgctttaaataagtgaacata 268
Query: 545 ttgcattttatttatcaaacaccacaagctctttacagcatcagaaa------------- 591
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgtattttatttatcaaacaccacaagctctttacagcatcagaaatgacaaaatactt 208
Query: 592 ----------tgacaaaatactttttaaaatactccttcagtatactagaattgggtttt 641
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tttttttttttgacaaaatactttttaaaatactccttcagtatactagaattgggtttt 148
Query: 642 cgatttgtctgttcatttactttttgttt 670
||||||||||||| ||||||||||||||
Sbjct: 147 tgatttgtctgttcgtttactttttgttt 119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_h22.g1 MSMg01no213_h22.g1 CHROMAT_FILE:
MSMg01no213_h22.g1 PHD_FILE: MSMg01no213_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:32 2005
(254 letters)
>mm_chr4_53582671_53583324
Length = 654
Score = 476 bits (246), Expect = e-139
Identities = 252/254 (99%)
Strand = Plus / Plus
Query: 1 gctattgtgtcctttcttccttcccgttttttgatttctttgtatgtgtaacaatagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctattgtgtcctttcttccttcccgttttttgatttctttgtatgtgtaacaatagacc 260
Query: 61 aacaaggattgcatttcactcttgcatgaacaattgatccttttgtaaattacaagtaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaggattgcatttcactcttgcatgaacaattgatccttttgtaaattacaagtaca 320
Query: 121 ggtttcaagtttggtattttctaggggttcatcattagagaatttgttcaaaaagtaaaa 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatttcaagtttggtattttctaggggttcatcattagagaatttgttcaaaaagtaaaa 380
Query: 181 aatgattaggaaaaaaatgattagggacccaaataatacactgcccttcatttttaacac 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 aatgattaggaaaaaaatgattagggacccaaatattacactgcccttcatttttaacac 440
Query: 241 tcagttttacaacc 254
||||||||||||||
Sbjct: 441 tcagttttacaacc 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
