Query= MSMg01no215_b14.b1 MSMg01no215_b14.b1 CHROMAT_FILE:
MSMg01no215_b14.b1 PHD_FILE: MSMg01no215_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:39 2005
(680 letters)
>mm_chr4_36662668_36663751
Length = 1084
Score = 1251 bits (647), Expect = 0.0
Identities = 674/691 (97%), Gaps = 15/691 (2%)
Strand = Plus / Minus
Query: 5 gaattcatgatcacctgctaaggttgcctttaaaaggcaaaggcttgagtggagagggcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gaattcatgatcacctgctaaggttgcctttaaaaggcaaaggcttgagtggagagggcc 757
Query: 65 tactcgtttctgtgtcacaaactccagtaagaattttatactatgtataaggtctaggta 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tactcgtttctgtgtaacaaactccagtaagaattttatactatgtataaggtctaggta 697
Query: 125 tctgcacattttcctaaccattgagtttgtttattttaatcaattttgttgcatttttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tctgcacattttcctaaccattgagtttgtttattttaatcaattttgttgcatttttaa 637
Query: 185 acatcatttatcagaaaaattaattttcagagattaaactaatctggtatttattcaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acatcatttatcagaaaaattaattttcagagattaaactaatctggtatttattcaagt 577
Query: 245 actgttcttctaaaaccaaaattgattaattatttctctgtgtctgtctaccctgtcctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 actgttcttctaaaaccaaaattgattaattatttctctgtgtctgtctaccctgtcctc 517
Query: 305 tttctgtttctccacagat----acacacacacacaccatagatgaccttatttgaccaa 360
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 516 tttctgtttctccacagatacacacacacacacacaccatagatgaccttatttgaccaa 457
Query: 361 tccatcttttttctgagtactgtgtgtgagtttcttacttctttccattctctctccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tccatcttttttctgagtactgtgtgtgagtttcttacttctttccattctctctccaca 397
Query: 421 agtttatctttctaactttttgtttcaccatacttcagtaactcttctttctcttagaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agtttatctttctaactttttgtttcaccatacttcagtaactcttctttctcttagaag 337
Query: 481 aaaatacaggtctttcattcttgcccacatttccaggctttgccatcctgggagatacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaaatacaggtctttcattcttgcccacatttccaggctttgccatcctgggagatacaa 277
Query: 541 acttttatagaactagagaaaagaatgaatcaatgggaatgtataaatcccaaaggcata 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 actttcatagaactagagaaaagaatgaatcaatgggaatgtataaatcccaaaggcata 217
Query: 601 gtctaaagagaa----aaaacaaaacaaaac-------aaaaaaaaaacagggattagga 649
|||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 216 gtctaaagagaaaaacaaaacaaaacaaaacaaaaaaaaaaaaaaaaacagggattagga 157
Query: 650 taggatgtagggaggattccatacttctctg 680
|||||||||||||||||||||||||||||||
Sbjct: 156 taggatgtagggaggattccatacttctctg 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1084
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1074
Effective search space: 719580
Effective search space used: 719580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_b14.g1 MSMg01no215_b14.g1 CHROMAT_FILE:
MSMg01no215_b14.g1 PHD_FILE: MSMg01no215_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:39 2005
(643 letters)
>mm_chr4_36645890_36646928
Length = 1039
Score = 1193 bits (617), Expect = 0.0
Identities = 635/643 (98%), Gaps = 4/643 (0%)
Strand = Plus / Plus
Query: 1 tctacccttgccacagtgatatggagatgtgccctttatctattgctggcttaggtgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacccttgccacagtgatatggagatgtgccctttatctattgctggcttaggtgtta 260
Query: 61 gaacaccgagaatattagctccctcttctagctcagctaacatctaactatactgtgtgc 120
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gaacacccagaatattagctccctcttctagctcggctaacatctaactatactgtgtgc 320
Query: 121 aaaaacgactaacctaaatatacatgtggcattctatggcaaaatcttttaacaaattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaacgactaacctaaatatacatgtggcattctatggcaaaatcttttaacaaattga 380
Query: 181 tcttggaaatttagtctgcctgctgaaaatccagacaaatttcactttttaacttaacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttggaaatttagtctgcctgctgaaaatccagacaaatttcactttttaacttaacag 440
Query: 241 cttttcttgtgatccaggcaaaaggatgcccctttcactcacacttcctgttttccttac 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtcttgtgatccaggcaaaaggatgcccctttcactcacacttcctgttttccttac 500
Query: 301 agggtgtatgtgtcccctcaatgagaaaacttcccttgctcttcctcaaaactagcactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggtgtatgtgtcccctcaatgagaaaacttcccttgctcttcctcaaaactagcactc 560
Query: 361 agatattcctgtctagcagctcttatcttttcaaggacacaccactgttaactgtccacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatattcctgtctagcagctcttatcttttcaaggacacaccactgttaactgtccacc 620
Query: 421 cctaattttgtcaacatgtactaacctttgtctttcaaaatggattcaaaattattgaat 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 cctaattttgtcaacatgtactaacctttgtctttcaaaatggattcaaatttattgaat 680
Query: 481 gagcaattaatactctaagttcactttatcaggaacagtggtaacaatttctgcatataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcaattaatactctaagttcactttatcaggaacagtggtaacaatttctgcatataa 740
Query: 541 cactggctggctatatacaatataaagggacatgtgtttaatatttttgaaaagtgaaag 600
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cactggct----atatacaatataaagggacatgtgtttaatatttttgaaaagtgaaag 796
Query: 601 ttttacaaattgttatgatcatggtcttagcagatagtgttct 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttttacaaattgttatgatcatggtcttagcagatagtgttct 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1039
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1029
Effective search space: 651357
Effective search space used: 651357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
