BAC Information

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BAC

Clone NameMSMg01-215E17
Chromosome4 (Build37)
Map Location 123,838,695 - 123,889,812
singlet/doubletdoublet
Overlap genenone
Upstream geneHpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215E17.T7 (MSMg01no215_e17.b1)MSMg01-215E17.TJ (MSMg01no215_e17.g1)
ACCAG395593AG395594
length705749
length of high quality
(start - end)
276 (428 - 703)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no215_e17.b1 PHD_FILE: MSMg01no215_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:55 2005CHROMAT_FILE: MSMg01no215_e17.g1 PHD_FILE: MSMg01no215_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,838,695 - 123,838,970)(123,889,570 - 123,889,812)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GCCCATTACTAACAGGCAGGAGAGGGCAGCGTGGGGAACCTCACAGAAGG
CAGGAGGCATCAGGCGCCCTGCTTCCTGGAGGATCTGGGCTAGCTCTAGA
GTGTGCTGGGACTCTGGCAGCCTTGTCTCCATCCCACATCAGCAGGACGC
ACAGAAGGTGTTACCGTCTATGGCAGATGCTCTATGCTTTTCTTCGTCAG
CTTTGAGGCTCCGAAGAGAGCTATGGATCCACTCTCCAGAAACACACACA
CACACACACACATTCTCACACACACACACACACACACACACACCAGCCTT
GGTGGTGATTTTCCCCAACGNNCCATGTGGTGGTGTATACATCCTGTAGT
CCCAGCAACCGCAAAACTTGAAAGATTAAGGCTAGCCTGGGCTACATAGT
AGAAACGAGAGTGTGGAGAGATAAAACCATAACAGTCCCCATTTATCCAG
AGAGCAGCACAACATGAACACGCATAGGCACTTATCATGGCTCCTATCAC
ACAGGAAGTGCCATTTTTGGTTATAATTCCCATGTCGTGCTGATGACAGC
CTTTGTACCCACCTCACCCCCTCAGTATAGATGAGACACCTGAGTCCCTA
AACCCTTATGCCTTAGTTAGGGTTTCTATTGCTGCATTGAAAACACCATG
ACCAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAGGTTTCTAGAGATAACTCGA
GCTGTGGGGGTGATCAAGAGAGTGTGTGTGGGGGGGTCCTAAAATAAAAG
GCAAATGCCAGAGGCAATAAAGGATATGTTAATTAAGCCTAATGATATTA
CATTTAAAGGTCCATGGGACTATAGGCTGGAGAAGTGTGTGTGTATCTGT
GTGTCTGTGTGTGTATGTATGTGTACAGTTACACATATGTATATATGTAT
GTATGTATGTATGTATGTATGTTTTTACGGACCATAACTAAACCAAAACG
CCCAAATGTTTTGATTTTTTCCCCGAAACAAACCCCCTGTTAAATATTGT
GATGGAGGATGAGGTNNCCCCCCCCAAATAAAAAAAATAATTGGGGGGGG
GGGGGGTGTACATGCAATGCCCGTTATTGTATGTCCTTTTGGGCTCACTA
CCTTGTATTTGCTCCCGTATCCCTTATCCTGACTCCCATGAAGTTTCTCA
TTTTTCTTTCGCTCATCAAGTCTTTTTTCATTCACGTCCTTTAATTTTTT
CTTCTTCGCACCACATTTTTCTTTTTCCTCCCCTTAAACCACAAGCGTTT
CTTTTTGTTTCTACTATTTTTTTTTTCCCCCCCTCCCTTACTATTTTCTG
CATCTTCACCCTTTGCTATTTTTTATCCCCACTATTTTGACTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_e17.b1 MSMg01no215_e17.b1 CHROMAT_FILE:
MSMg01no215_e17.b1 PHD_FILE: MSMg01no215_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:55 2005
         (276 letters)



>mm_chr4_123838495_123839170
          Length = 676

 Score =  534 bits (276), Expect = e-156
 Identities = 276/276 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggctagcctgggctacatagtagaaacgagagtgtggagagataaaaccataacagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctagcctgggctacatagtagaaacgagagtgtggagagataaaaccataacagtc 260

                                                                       
Query: 61  cccatttatccagagagcagcacaacatgaacacgcataggcacttatcatggctcctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatttatccagagagcagcacaacatgaacacgcataggcacttatcatggctcctat 320

                                                                       
Query: 121 cacacaggaagtgccatttttggttataattcccatgtcgtgctgatgacagcctttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacaggaagtgccatttttggttataattcccatgtcgtgctgatgacagcctttgta 380

                                                                       
Query: 181 cccacctcaccccctcagtatagatgagacacctgagtccctaaacccttatgccttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccacctcaccccctcagtatagatgagacacctgagtccctaaacccttatgccttagt 440

                                               
Query: 241 tagggtttctattgctgcattgaaaacaccatgacc 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagggtttctattgctgcattgaaaacaccatgacc 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no215_e17.g1 MSMg01no215_e17.g1 CHROMAT_FILE:
MSMg01no215_e17.g1 PHD_FILE: MSMg01no215_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:55 2005
         (243 letters)



>mm_chr4_123889448_123890090
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaggtttctagagataactcgagctgtgggggtgatcaagagagtgtgtgtggggggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atgaggtttctagagataactcgagctgtgggggtgatcaagagagtgtgtgtggggggg 306

                                                                       
Query: 61  tcctaaaataaaaggcaaatgccagaggcaataaaggatatgttaattaagcctaatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcctaaaataaaaggcaaatgccagaggcaataaaggatatgttaattaagcctaatgat 246

                                                                       
Query: 121 attacatttaaaggtccatgggactataggctggagaagtgtgtgtgtatctgtgtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 attacatttaaaggtccatgggactataggctggagaagtgtgtgtgtatctgtgtgtct 186

                                                                       
Query: 181 gtgtgtgtatgtatgtgtacagttacacatatgtatatatgtatgtatgtatgtatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtgtgtgtatgtatgtgtacagttacacatatgtatatatgtatgtatgtatgtatgtat 126

              
Query: 241 gta 243
           |||
Sbjct: 125 gta 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)