Query= MSMg01no215_k03.b1 MSMg01no215_k03.b1 CHROMAT_FILE:
MSMg01no215_k03.b1 PHD_FILE: MSMg01no215_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:22 2005
(314 letters)
>mm_chr4_48257508_48258221
Length = 714
Score = 592 bits (306), Expect = e-173
Identities = 309/310 (99%)
Strand = Plus / Minus
Query: 5 gaattccacttggtgtggaggtagaggacaccttgtgagagttctgtctttctactatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattccacttggtgtggaggtagaggacaccttgtgagagttctgtctttctactatat 591
Query: 65 gggttccagagattgaatttaggccattaagcttagtggcaagttcattttaaccactga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gggttccagagattgaatttaggccattaagcttagtggcaagttcattttaaccactga 531
Query: 125 gccatctcactagctctatttaaagatttttaaatactgagttttgtgcaacagccaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gccatctcactagctctatttaaagatttttaaatactgagttttgtgcaacagccaaga 471
Query: 185 gaatgcccttttatacaaatatgtcactatacatctcagatggaattgcttaatagctga 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 470 gaatgcccttttatacaaatatgtcactgtacatctcagatggaattgcttaatagctga 411
Query: 245 taaacctaatgtgtgttgaagagattatctaataagtcgtggaatatggttagagaaagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 taaacctaatgtgtgttgaagagattatctaataagtcgtggaatatggttagagaaagt 351
Query: 305 tctccattgt 314
||||||||||
Sbjct: 350 tctccattgt 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_k03.g1 MSMg01no215_k03.g1 CHROMAT_FILE:
MSMg01no215_k03.g1 PHD_FILE: MSMg01no215_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:22 2005
(286 letters)
>mm_chr4_48112715_48113400
Length = 686
Score = 439 bits (227), Expect = e-128
Identities = 260/283 (91%), Gaps = 19/283 (6%)
Strand = Plus / Plus
Query: 1 attaccgagattgcctgcaatttaattcaggtcttaaggaggtggaccctatgtgtcact 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 attaccgagattgcctgcaatttaattcaggtcttaaggaggtggatcctatgtgtcact 260
Query: 61 gggaaagaatccttgcatctagacagcagcctacatatgtctctagattgggtttgaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaaagaatccttgcatctagacagcagcctacatatgtctctagattgggtttgaaat 320
Query: 121 gggacctttctcctcatcttgctctaatttattctctgaaataacgggccttggaaggag 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggacctttctcctcctcttgctctaatttattctctgaaataacgggccttggaaggag 380
Query: 181 cttcactgccacgctgcctaggggaggagctcaccctacgtgggaccatctgagacagcg 240
|||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 381 cttcactgccac-------------------caccctatgtgggaccatctgagacagcg 421
Query: 241 tacaactcgagcaaccactggaggatgtcgagctcgcttcagg 283
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 422 tacaacacgagcaaccactggaggatgtcgagctcgcttcagg 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
