BAC Information

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BAC

Clone NameMSMg01-215M18
Chromosome4 (Build37)
Map Location 76,840,243 - 76,840,352
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215M18.T7 (MSMg01no215_m18.b1)MSMg01-215M18.TJ (MSMg01no215_m18.g1)
ACCAG395917AG395918
length733738
length of high quality
(start - end)
110 (426 - 535)195 (450 - 644)
definitionCHROMAT_FILE: MSMg01no215_m18.b1 PHD_FILE: MSMg01no215_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:33 2005CHROMAT_FILE: MSMg01no215_m18.g1 PHD_FILE: MSMg01no215_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTAGTTTCCCCTTCAGCCCATTTTTTAATGGTGTAATTTAATAT
TATAAAATTATACTTCTTCACCCCTTGATATATGATGAATTTAAATGCAC
CATCAGATAAACGAAAATATTGGAACTGTTCCCAGAACGAGTAATGTTAC
CGTTACCTGAATAATTCCGTCTATTGAGTGGTTTATGTGTGGAAATGACT
CCATCTCTCATATACTCATGATAAAAAATACTGTACAGGTCTCTGTTCCT
CTCTAATCCATGCCTGACATGGTCAAATTATCATAAATTATTGTTAAATA
TCACTAATATTTATGTGACATGAGCGACGTTTCTAAGAAATTATATAATC
AAAACTGATAAGTTACCCCCACACTGATAAATCATATAGTATAGCTTCTA
ATTGAATCGCACAGGTGTTACTTGTTGAATTAAAATTAAATGTCATTACT
AACATCATGATTTGCATTGTATTTCTCCAGGTCTCAGGGTGGAGAACTTT
CTTTGTATGCCTAACCTGTGATTCGATGGTAAGATTACAGTTAACACATG
CATAGCTTTATAATGCGGTTTTTATGCCTAAGTTTATGCTATTATTTAAT
TTTAAAATGGTTCTATTTCTTTTTGAAATGCTACACTTACAATACAGAAG
ATTTATTTATTAATGTATCAAGGCTGTTTTTTT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGTCGAATGCT
TTTTCTGCACCTTATTCACCGATCACATTTAGGATTGGCAGAGACCCTTC
CCCCGGCAGAAGATGTAATTCACCACTTTGGGATTAAGCATTGTTGTTAT
AACTTGAGGTTCGCTGATGTGCACAAGGCCAGCAATTCAGTTTCTTCTTA
ATAATATGAGATTATTTCTGATATAGCAACAGAGCATCTGATGATTAAGA
CAGTTTTTCTGTTTTTACCGCCCCCCCCCCATGGGTAAAATTGTTGGTGC
ACAAAGAAAAGAAACCGCCCCCCAACCCAAAGCATCTGCATAACCGGGGA
CTATGATGTCACACACCTGCAACCATGGCACTGCGGAAGAAGCATCAGGA
GGATTCTCCGGGCTTGCTTTGGCTAGCCAAATCAGGAAGCTCCAGGTTTA
GGAAAATACCTTGTCTGAGCAGGAAAAGTGGATTATAATAAAAGAAGAAA
TGACATTGACCCATGGTCTCTTCATGCAAGTACACTCACATACACATGCA
TGTGTACACATGCATACAACACACACACACACACACACACTCACTGATAG
AGAGATAGATAGAGAGAGAGAGAGAGAGAGTGATAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_m18.b1 MSMg01no215_m18.b1 CHROMAT_FILE:
MSMg01no215_m18.b1 PHD_FILE: MSMg01no215_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:33 2005
         (110 letters)



>mm_chr4_76840043_76840552
          Length = 510

 Score =  166 bits (86), Expect = 3e-46
 Identities = 104/110 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataaatcatatagtatagcttctaattgaatcgcacaggtgttacttgttgaattaaaa 60
           ||||||||||||| || | ||||||||||||||| | |||||||||||||||||||||||
Sbjct: 310 gataaatcatataataaaacttctaattgaatcgtaaaggtgttacttgttgaattaaaa 251

                                                             
Query: 61  ttaaatgtcattactaacatcatgatttgcattgtatttctccaggtctc 110
           ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 250 ttaaatgtcattactaacatcatgatttgtattgtatttctccaggtctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)