TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATACGNGAGGAGCCGCGG
AATTCCATATCTAACAAATAAGAATTTAAAACAGAAAGTGTAGGGTAGGA
TTATAGTATTATACTCTTACTCCTGGTGCACAATGAACATTTTATATGTA
TCCGTATATAAACGTATATATTGGAACTGGTAAAGAATGAGTAATGTTAC
CGTTACCTGTAGAATTCCATCTATAAAGTGCTTTATGTGTGCAGATGAAT
CTATCTCTCATAGACTCATGAGAAGAAAGACTGTACAGGTCTCTGTTCCT
CTCTAATCCATGCCTGAATCGGTCTAATTAAAAGAAATTAATGTTAAATA
TCAATAATTTTTATTTCACCCCCACCGACATTTCTAACAAATTATATAAT
CAAAACTGTTAAGTTAAACACACATTGATAAATCATATAATAAAACTTCT
AATTGAATCGTAAAGGTGTTACTTGTTGAATTAAAATTAAATGTCATTAC
TAACATCATGATTTGTATTGTATTTCTCCAGGTCTCAGGGTGGAGAACTT
TCTTTGTATGCCTAACCTGTGAGTCGATGTTAAGATTACTTGTTAACACA
TGCATATTTTTACAATGTGCTTTTTATGCCTAAGCTTATGCTATTATTTA
TTTTTTTATTGGCCTTATCTCACTCCCGAATTGTACCCACACCACTATTT
TTTATTTAATTATTAATGCAATTTACTTTT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TTTTCTCCACCAGATTAAAAGCAAACAATAAAAATAAAACAGAGCAGCTA
CCACCGGGAAACAATATAATTCACCAATTTGGGATTAAACATTGTTGTTA
TAACTTGAGGTTCGCTGATGTGCACAAGGCCAGCAATTCAATTTCTTCTT
AATAATATGAGATTATTTCAAAGATTAACAACAGAGTATCTGATGATTAA
GACAGTTTTCCTGTTACTAGCCACATCGCCTCAATGGGTAAAATTGTTGG
TGCACAAAGAAAAGAAACCGCGATTGAACCCAAAGCATCTGCATAACCGG
CAACTATGATGTCACACACCTGCAACCATGGCACTGCGGAAGAAGCATCA
GGAGGATTCTCCGGGCTTGCTTTGGCTAGCCAAATCAGGAAGCTCCAGGT
TTAGGAAAATACCTTGTCTGAGCAGGAAAAGTGGATTATAATAAAAGAAG
AAATGACATTGACCCATGGTCTCTTCATGCAAGTACACTCACATACACAT
GCATGTGTACACATGCATACAACACACACACACACACACACTCTCTCTTA
TAGAGATATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGA

Query= MSMg01no215_m20.b1 MSMg01no215_m20.b1 CHROMAT_FILE:
MSMg01no215_m20.b1 PHD_FILE: MSMg01no215_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:33 2005
         (192 letters)



>mm_chr4_76840261_76840852
          Length = 592

 Score =  364 bits (188), Expect = e-105
 Identities = 191/192 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgcacaatgaacattttatatgtatccgtatataaacgtatatattggaactggtaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtgcacaatgaacattttatatgtatccgtatataaacgtatatattggaactggtaaag 333

                                                                       
Query: 61  aatgagtaatgttaccgttacctgtagaattccatctataaagtgctttatgtgtgcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aatgagtaatgttaccgttacctgtagaattccatctataaagtgctttatgtgtgcaga 273

                                                                       
Query: 121 tgaatctatctctcatagactcatgagaagaaagactgtacaggtctctgttcctctcta 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgaatccatctctcatagactcatgagaagaaagactgtacaggtctctgttcctctcta 213

                       
Query: 181 atccatgcctga 192
           ||||||||||||
Sbjct: 212 atccatgcctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no215_m20.g1 MSMg01no215_m20.g1 CHROMAT_FILE:
MSMg01no215_m20.g1 PHD_FILE: MSMg01no215_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:33 2005
         (214 letters)



>mm_chr4_76685100_76685713
          Length = 614

 Score =  391 bits (202), Expect = e-113
 Identities = 211/214 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttctccaccagattaaaagcaaacaataaaaataaaacagagcagctaccaccggga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tttttctccaccagattaaaagcaaacaataaaaacaaaacagagcagctaccaccggga 260

                                                                       
Query: 61  aacaatataattcaccaatttgggattaaacattgttgttataacttgaggttcgctgat 120
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 261 aacaatataattcaccaatttgggattaaacgttgttgttataacttgaggttcactgat 320

                                                                       
Query: 121 gtgcacaaggccagcaattcaatttcttcttaataatatgagattatttcaaagattaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcacaaggccagcaattcaatttcttcttaataatatgagattatttcaaagattaac 380

                                             
Query: 181 aacagagtatctgatgattaagacagttttcctg 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagagtatctgatgattaagacagttttcctg 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)