BAC Information

Click to search

BAC

Clone NameMSMg01-216J08
Chromosome4 (Build37)
Map Location 16,872,936 - 16,873,314
singlet/doubletsinglet
Overlap genenone
Upstream geneNbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216J08.T7 (MSMg01no216_j08.b1)MSMg01-216J08.TJ (MSMg01no216_j08.g1)
ACCAG396408AG396409
length8701,163
length of high quality
(start - end)
---381 (69 - 449)
definitionCHROMAT_FILE: MSMg01no216_j08.b1 PHD_FILE: MSMg01no216_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:38 2005CHROMAT_FILE: MSMg01no216_j08.g1 PHD_FILE: MSMg01no216_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCTCCTCCTTCTTTCCTCTTTTTTCTTCCTCTCTTCTCTACTTCTCTT
TTTTGTTACCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGTAATTCCAGCTCAAAAACTTAAAACATATTTTTAACAA
AATATTAGCAAGAAGACAGTTATCAGGATCCTGTGACTGGACCACCAATC
AAATAGTACATGTGCGAGGGACCATGCTCTGGCCACATATGTGGCAGAGG
ATGGCCTTGTTGGACATCAGTGTAAGGAGTGGCCCTTGGACTGAGGGTTT
TCAATGCCCCAGTGAAGGGCAAATGCCAGGGTCTGGAATGTGTTATAGGA
TGTATAGATGGAGGAGCACCCTCCTAATGGCAGGCCGCGTTTCTATAGAA
TACGCTCCTTCCCCACCTAATGCACGATTTTTTTTTTTTTCCCCCCCCCC
CTCCTCCTTATCCACTTATATTTCCATACCTTATGTCCTTTCCCCCCCTC
AAAAAATAAAATAATCCCTCTCACCTTGTCCCCTTTTCTCCCCTCCTTAC
CATTTCCCCCACCCTTCCATAATTCTACCAATTTCCCCTTTGTTACTTCC
CCCCTCCTTTTGTTCTCCCTGTCTCTATTATTCCATCCATTTTCCCCTTT
TTTTCTTTACACCTTATCCTTTTCCCACCCTTCCTTTTCCCCCTTCCATT
CCTTTTACCCATTTTTCTCTCCTTTTTACACGCTCTCCATCTTCTCTTTT
TCTTGTTATACCTTACCCTTTCATTTCCTTTCCCTTTACCTTCCCCTTTT
TTCATTCTCTTCTTCCTGTTTCCTCCTCCCTCCTTATACTTTTCCCTTTT
TCCCACACATTTCCATTTTT
NTAAAGAAGTGAGNCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGTATGCTTATAGAACTATTCTAGATTTTC
TAGGAAGATTGCAGAGAAAAAAATAAAAGGAAAAAATTGTTAATAATCAC
TCACATGTGGAACATGAATGCTGGAGCCCCCAAACAAAAGTGCTCTCTTA
TCCTAAGTGGTGATTTTGTGGGGAGGGAAGCAGGCAAAGCTAAGCCATAG
AAAGTGGGAACGTCATGAACTATATTCATATCCATATAACTTCAAAGAAA
ATATCTTGATAAAAACATCTGCCTTAAAACTGGAAAAAATGTAGTAAGAT
TCTAATTCAGGAAGATTTCTCACACCTAAACAAGTCTTAAAAACTTTTGT
TCTGCTATTTCATTAAAGTGTGTGATTTCAGAAGGCAAAACCTTCTATTT
TTTTTTCCGCCCCCCCCACTAGAACTTGAAAATCAAACAAATAAATCTTC
AGTCCCAGCACACACCAACAGCTATGCAGTGTGGTGTGGTATCTGGAGTA
CTCATTTGCCAGTTGTCAGTCTTCTGAGCAATAGGAAAAGCCACAGCACT
TGCGACAAAGAAAAACAGAGGCCAACCTTCTATGAACTCGGAGCAAGGTA
ATCACTCTATTTTGCATCCGCAGACAGGCATGATGATTTTGAGCAATGCC
CTAAGTAGTGTCATTTAAATTGTACATATAGTAACACCCCTGCAATATAA
AACAGTAACCTTTATGTACTGAGGTTGCTATAGCTGTCATTACTTCCAAT
GTGACCTGCTTCATCGAAGAGTTTTTCATCTATTATTTTATTACGGCAAA
CTAAAGGTAAGAGTTTCACTGTATTCTCCATTTTTACCAATGATTTATGA
AAAAGTATTCTCTTTCAAAAAAATTTGCAGTGTGGTATAAACACAAATAA
ATTTGCCTTGACTTTCTCGGTTAAAGCTAAAAATCACAAGGGTTTCCAAA
GGGTCAATTTGAAACGGGGAAAAATAACCCCTTTTGGGGTTTTTTCCTTT
TAGGGAAAACACATATACCATTCTTTCCGGGTTCTTGGGAAATCTAATTT
TTTTAAAATCCCCAAAAAATATAACCGGGCCTTTTAAAGGAAGAATAATA
AATTTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_j08.g1 MSMg01no216_j08.g1 CHROMAT_FILE:
MSMg01no216_j08.g1 PHD_FILE: MSMg01no216_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:38 2005
         (381 letters)



>mm_chr4_16872736_16873515
          Length = 780

 Score =  673 bits (348), Expect = 0.0
 Identities = 372/380 (97%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtatgcttatagaactattctagattttctaggaagattgcagagaaaaaaataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tcagtatgcttatagaactattctagattttctaggaagattgcagagaaaaaaataaaa 520

                                                                       
Query: 61  ggaaaaaattgttaataatcactcacatgtggaacatgaatgctggagcccccaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaaaaaattgttaataatcactcacatgtggaacatgaatgctggagcccccaaacaaa 460

                                                                       
Query: 121 agtgctctcttatcctaagtggtgattttgtggggagggaagcaggcaaagctaagccat 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agtgctctcttatcctaagtgatgattttgtggggagggaagcaggcaaagctaagccat 400

                                                                       
Query: 181 agaaagtgggaacgtcatgaactatattcatatccatataacttcaaagaaaatatcttg 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agaaagtgggaacatcatgaactatattcatatccatataacttcaaagaaaatatcttg 340

                                                                       
Query: 241 ataaaaacatctgccttaaaactggaaaaaatgtagtaagattctaattcaggaagattt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ataaaaacgtctgccttaaaactggaaaaaatgtagtaagattctaattcaggaagattt 280

                                                                       
Query: 301 ctcacacctaaacaagtcttaaaaacttttgttctgctatttcattaaagtgtgtgattt 360
           |||||||||||||||||||||||| |||| |  |||||||||||||||||||||||||||
Sbjct: 279 ctcacacctaaacaagtcttaaaatcttt-gccctgctatttcattaaagtgtgtgattt 221

                               
Query: 361 cagaaggcaaaaccttctat 380
           | ||||||||||||||||||
Sbjct: 220 ccgaaggcaaaaccttctat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 780
Length adjustment: 9
Effective length of query: 372
Effective length of database: 771
Effective search space:   286812
Effective search space used:   286812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)