Query= MSMg01no216_k13.b1 MSMg01no216_k13.b1 CHROMAT_FILE:
MSMg01no216_k13.b1 PHD_FILE: MSMg01no216_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:45 2005
(677 letters)
>mm_chr4_95162185_95163261
Length = 1077
Score = 820 bits (424), Expect = 0.0
Identities = 457/468 (97%), Gaps = 2/468 (0%)
Strand = Plus / Minus
Query: 211 gaacttcaagtcttat-aagaaaaaaatcgaagaagatctcagaagatggaaagatctcc 269
|||||||||||||| | |||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1077 gaacttcaagtctt-tgaagaaagaagtcgaagaagatctcagaagatggaaagatctcc 1019
Query: 270 catgctcatggattggcaggattaatatagtaaaaatggctattttgctgaaagcaatct 329
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1018 catgctcatggattggcaggattaatatagtaaaaatggctgtcttgctgaaagcaatct 959
Query: 330 acagattcaacgcaattcccatcaaaattccaactaaattcttcacagactcacaaagca 389
|||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 958 acagattcaatgcaattcccatcaaaattccaactaaattcttcacagacttagaaagca 899
Query: 390 caatttgcaaattcatctggatttagccacttcttagctccacccttgccaatgaacttt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 caatttgcaaattcatctggatttagccacttcttagctccacccttgccaatgaacttt 839
Query: 450 gagacttgacatcatttgatcaaacactcattattgagaatctgttctacgataatgtgg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gagacttgacatcatttgatcaaacactcattattgagaatctgttctacgataatgtgg 779
Query: 510 tttttcttctagactgtaacttacagtcatcataaccttgcatgctcttgcagttttacc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tttttcttctagactgtaacttacagtcatcataaccttgcatgctcttgcagttttacc 719
Query: 570 ggctatgtcgaacctcctgttatgtgtttttaggcatctaatttcctggtccatttccaa 629
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggctatgttgaacctcctgttatgtgtttttaggcatctaatttcctggtccatttccaa 659
Query: 630 aaacaacttgtttaagaactgaactcctccctgtttgccattttgtag 677
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aaacagcttgtttaagaactgaactcctccctgtttgccattttgtag 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no216_k13.g1 MSMg01no216_k13.g1 CHROMAT_FILE:
MSMg01no216_k13.g1 PHD_FILE: MSMg01no216_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:45 2005
(543 letters)
>mm_chr4_95019087_95020029
Length = 943
Score = 1011 bits (523), Expect = 0.0
Identities = 538/543 (99%)
Strand = Plus / Plus
Query: 1 ctttgctgctgacgtctcagaggccccttcagttcacagcatttgagcatcccaaagtgc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgctgctgaggtctcagaggccccttcagttcacagcatttgagcatcccaaagtgc 260
Query: 61 tgtacctggtgtgctgtttctgagtcctgacggaactgagagaaatcgtgtgtaacatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtacctggtgtgctgtttctgagtcctgacggaactgagagaaatcgtgtgtaacatgc 320
Query: 121 ctgacagaacatatttagtcagtgatggctgcctccacccttctgtctcccatataactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgacagaacatatttagtcagtgatggctgcctccacccttctgtctcccatataactc 380
Query: 181 attctcccccacccttgtagtttctcatctcttctgagaaatcatcagcaacacccctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctcccccacccttgtagtttctcatctcttctgagaaatcatcagcaacacccctga 440
Query: 241 ttgacactaagagaggagggacctagtgggaccacgcacggggtccagggcttcggcggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 441 gtgacactaagagaggagggacctagtgggaccacgcacggggtccagggctgcggtggg 500
Query: 301 agtttatcaggattagtggcctattttctttcataatcttattccaggacccatcaccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtttatcaggattagtggcctattttctttcataatcttattccaggacccatcaccaa 560
Query: 361 aaactccttcaggccctggtcctcccttatccctgcatcccacctctggattaaaggcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaactccttcaggccctggtcctcccttatccctgcatcccacctctggattaaaggcag 620
Query: 421 aaaacagaaagagctaccagtatgctttggaaaaattatgatcttgggctttagagatgg 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaatagaaagagctaccagtatgctttggaaaaattatgatcttgggctttagagatgg 680
Query: 481 ctcagcagataatggcacttgctgtcaagcccagcatgagtttgatccctgatcccacat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcagcagataatggcacttgctgtcaagcccagcatgagtttgatccctgatcccacat 740
Query: 541 ggt 543
|||
Sbjct: 741 ggt 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
