BAC Information

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BAC

Clone NameMSMg01-216M12
Chromosome4 (Build37)
Map Location 148,490,426 - 148,644,062
singlet/doubletdoublet
Overlap geneDffa, Cort, Apitd1, LOC666774, Pgd, Kif1b
Upstream gene2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864
Downstream geneLOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216M12.T7 (MSMg01no216_m12.b1)MSMg01-216M12.TJ (MSMg01no216_m12.g1)
ACCAG396540AG396541
length751732
length of high quality
(start - end)
237 (124 - 360)477 (129 - 605)
definitionCHROMAT_FILE: MSMg01no216_m12.b1 PHD_FILE: MSMg01no216_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:55 2005CHROMAT_FILE: MSMg01no216_m12.g1 PHD_FILE: MSMg01no216_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,490,426 - 148,490,661)(148,643,586 - 148,644,062)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTTTAGACCAGGCTGGCCTGGAACTCAGAAATCTGCCTGCCTC
TGCCTCCCAAGTGCTGTTATTCCAGGCATGCGCCACCACGCCCAGCTAGT
GTATACTCTTAACTGCTGAGCCATCCCTCTAGCCCATGTGTGGTATCACC
TTCTGCCTCTCTGCCAGCCAGAGAAGGCAGAGCGCAGGACTGGAGAATCC
ACAGCCCATGTTTCCCATCAGGAGATCAGACACCGCTACATACATGCCGG
ACCGACCGGAAGGGGAAAGCGAGGTCTGGGACGAGTGCAGCGGTTTCATT
GTTCTTTCTTTTTTCCCACGCCCCCGCCCCCCACCTGACGAGGAAGTCAG
GAGTGTGTGTGTGAGGCCGCGAAAAAAAAAAAAAAAGGGGGGGGGGGGGG
GGTCTTCTCCTCCCCCCTTCTCCCTTTTCTGTCGTGCCCCGTATCTGCTC
GTGTCCTCTCATAAACTTCATATACTCCTTATCCTTTTTTATGCTCCGAC
TTCTATTTTACAACATTTTTCTCTGATCTTCACTCAGCTATACTACTCCT
TGTTTTTTTACCTAATAATCTCTTATTATAATATACTTTACACATATTCT
CATTAATTCTTTTCTTTCATTCTTATTACAAACTACACCTATTATATACT
TCCCTTGACCTATATTCTTCTTTTCCTTTCTTTTTGTTAACTATGTCTAC
N
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTCAAATGGTCACCTTCGGT
TTGTTTAGGACTGTGGCAGTTACCAACATGAATGAGACAAGCAGCCGTTC
TCACGCTGTGTTCACCATTGTCTTTACCCAGAAGAAACAGGATCCTGAGA
CGAACCTTTCTACTGAGAAGGTGGGAGACTGCGGATCGCTGAGGTTGTGA
AGGGATTCTGTGGAGATCGTCCTTTTACTCGTTGCAGTTTGGACAGGATC
AGTGCTGTTCTCTCCCTTAAAGGTAGTGGCTTTTCATTCTACTCACCATT
TATCTCATGCCAGTTTCTACTGTGCTGGGTCTGCCGTGCAGCTGAAAGAT
AGAAAACACAGTTAAGAAAACGCAAAACTTTGGGAAAATAGTGTATTTTA
TGCAAATCAGTTAAGTGGGTCTGTTGGGGGAAAATACCTTTTCTTCTTGA
CTAGACCACAGTAATGTTCTTTGATAAAGCTGCTGCAATGATGTCTGCAG
GTGAATAGGCAGGCAGAGTATTCATTCCTGGGAAATAACTCTGGACCCAC
TCTAATTTGTTTAAGTACCTTTCTTTGCTTTGCTGTTTGTTTTTGTTACT
GAGACCTGAACTTGAGCCTATTGCATGGTGGGCAGGCACTGCTACTAAAG
CCATCCTAACCCCTGATTTCCCTGGTCGCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_m12.b1 MSMg01no216_m12.b1 CHROMAT_FILE:
MSMg01no216_m12.b1 PHD_FILE: MSMg01no216_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:55 2005
         (237 letters)



>mm_chr4_148490226_148490862
          Length = 637

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcatgcgccaccacgcccagctagtgtatactcttaactgctgagccatccctctagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcatgcgccaccacgcccagctagtgtatactcttaactgctgagccatccctctagc 260

                                                                       
Query: 61  ccatgtgtggtatcaccttctgcctctctgccagccagagaaggcagagcgcaggactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgtgtggtatcaccttctgcctctctgccagccagagaaggcagagcgcaggactgg 320

                                                                       
Query: 121 agaatccacagcccatgtttcccatcaggagatcagacaccgctacatacatgccggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatccacagcccatgtttcccatcaggagatcagacaccgctacatacatgccggacc 380

                                                                   
Query: 181 gaccggaaggggaaagcgaggtctgggacgagtgcagcggtttcattgttctttct 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccggaaggggaaagcgaggtctgggacgagtgcagcggtttcattgttctttct 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no216_m12.g1 MSMg01no216_m12.g1 CHROMAT_FILE:
MSMg01no216_m12.g1 PHD_FILE: MSMg01no216_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:55 2005
         (477 letters)



>mm_chr4_148643386_148644262
          Length = 877

 Score =  845 bits (437), Expect = 0.0
 Identities = 467/477 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatgagacaagcagccgttctcacgctgtgttcaccattgtctttacccagaagaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgaatgagacaagcagccgttctcacgctgtgttcaccattgtctttacccagaagaaac 618

                                                                       
Query: 61  aggatcctgagacgaacctttctactgagaaggtgggagactgcggatcgctgaggttgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 617 aggatcctgagacgaacctttctactgagaaggtgggagactgcggattgctgaggttgt 558

                                                                       
Query: 121 gaagggattctgtggagatcgtccttttactcgttgcagtttggacaggatcagtgctgt 180
           |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct: 557 gaagggattctgtggagagcgtccttttattcgttgcagtttggacaggatcagtgttgt 498

                                                                       
Query: 181 tctctcccttaaaggtagtggcttttcattctactcaccatttatctcatgccagtttct 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 497 tctctcccttaaagggagtggcttttcattctactcaccatttatctcatgccagttgct 438

                                                                       
Query: 241 actgtgctgggtctgccgtgcagctgaaagatagaaaacacagttaagaaaacgcaaaac 300
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 437 actgtgctgggtctgctgtgcagctgaaagatagaaaacacagttaagaaaatgtaaaac 378

                                                                       
Query: 301 tttgggaaaatagtgtattttatgcaaatcagttaagtgggtctgttgggggaaaatacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 377 tttgggaaaatagtgtattttatgcaaatcagttaagtgggtctgttggggaaaaatacc 318

                                                                       
Query: 361 ttttcttcttgactagaccacagtaatgttctttgataaagctgctgcaatgatgtctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttttcttcttgactagaccacagtaatgttctttgataaagctgctgcaatgatgtctgc 258

                                                                    
Query: 421 aggtgaataggcaggcagagtattcattcctgggaaataactctggacccactctaa 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aggtgaataggcaggcagagtattcattcctgggaaataactctggacccactctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)