BAC Information

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BAC

Clone NameMSMg01-216M14
Chromosome4 (Build37)
Map Location 56,164,607 - 56,164,842
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216M14.T7 (MSMg01no216_m14.b1)MSMg01-216M14.TJ (MSMg01no216_m14.g1)
ACCAG396543AG396544
length726722
length of high quality
(start - end)
74 (139 - 212)236 (128 - 363)
definitionCHROMAT_FILE: MSMg01no216_m14.b1 PHD_FILE: MSMg01no216_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:55 2005CHROMAT_FILE: MSMg01no216_m14.g1 PHD_FILE: MSMg01no216_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGAGAAGCCTAGAGATCCAAGGGGCAGCTGGGCTTGCTGGCTGA
CTCCTGTAACTCCAGAATGCACCCAGAATAATTGCTATTGGAATCCAGCT
TAGTCTTCCTAGTGAGTTTCCAGATAGCGTGCGCTATAAAACCACCACCA
ACTACAACAAATTAGGAGAGTTCCAGAGGAGCACACACGGAAGATCCCAG
AAGTAATGCTCATGACTTCACTAGTCCTGGGGGGTTGGCTACTTTTCCTG
TATCATACAGGATGTCCTTCTTGTTGATTGAGTATTAAGTACGATTAGAG
AGCTGTTGTTTATTAGCCACACCTCCCGCGCCATGGCCACATGCTTAGGG
GTATCATGCTATGCTGCCTACCGCCAGCGAAACATAGACATCATAGGTCA
GTATAACTATTGGCTACTTCCCTTCTTTGGAAGTTTGAATGACACCTTCT
AGTAGCAGCTCAGACTATATATTAGCATCGCAGAGGACCTCATATAAATT
ATATATCAGATGTAATCCTTCATTTTTGCCTTAACTCAAGCATACTACTT
CCGATTTATTTTTGTGGATGCGTCCACTAAGTAATTTGTTAGTTTCTACT
GCCGAAGATTATTGCCCTTATTTGAGTGTACCATATCTTGCCCATGTGCA
TAACCTGGTGCTTATCATGCCGTATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCATTATGCTAAAATGGGGG
TTTCATGGGTCCCGTATTCTTTCTCCCAGCTCGAAGGGAAATCCATTTCC
AGGGGAAAGTATTTTTCAGGGTTGTATTTCCAGTATTCTATCCATTTGGT
CTATCTTCAAAGCAAGAGCATAGCACCCCATCTTCAAATCTCTCTCTGCT
TCCTTGTCATATGAACTTTAGCCTTTTGTTTCAGATATGCTTTTGCCTGC
TTCTGATAAAGACTTGTGATTTGGTTTCTGGAGAGGGCTAAGTTGGTAAA
ACTTTTACAGTGCTATCTTGAGAACCTTAATCGGGATTGCCTGCTGGGAC
TGGCAGTGCCATCTAGAATCCCACTACTAGGGTAGCAAGAAGAGGATATA
TGGAGCTCAACTGGCCAGCTGAGAGAGACCCTGTCTCAAATCAAACAATC
AAACAAATAAATAAATGTGAAGAATGATTGAGAAAGAGCTTGACCTCTGG
CCTCCAAGTGCATGTGTAATTACACATGCTTACACCCCTGTTAACTACAC
TATATTCTACACATACAAATAGATGTGGGATATAGACACACATGATTACC
TTGGGAGTTACTAAGTTTGCCCAGACCCTTAGTTGTCACATCTGTGAGCT
CTCTTTTGCCGTACAAAGTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_m14.g1 MSMg01no216_m14.g1 CHROMAT_FILE:
MSMg01no216_m14.g1 PHD_FILE: MSMg01no216_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:55 2005
         (236 letters)



>mm_chr4_56164407_56165042
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctcgaagggaaatccatttccaggggaaagtatttttcagggttgtatttccagtatt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctcgaagggaaagccatttccaggggaaagtatttttcagggttgtatttccagtatt 260

                                                                       
Query: 61  ctatccatttggtctatcttcaaagcaagagcatagcaccccatcttcaaatctctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatccatttggtctatcttcaaagcaagagcatagcaccccatcttcaaatctctctct 320

                                                                       
Query: 121 gcttccttgtcatatgaactttagccttttgtttcagatatgcttttgcctgcttctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttccttgtcatatgaactttagccttttgtttcagatatgcttttgcctgcttctgat 380

                                                                   
Query: 181 aaagacttgtgatttggtttctggagagggctaagttggtaaaacttttacagtgc 236
           ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct: 381 aaagacttgtgatttgggttctggagagggttaagttgataaaacttttacagtgc 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)