CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGGCACCGCTGGGTTCTGCAGACTTTGGATACCTGGGTTTGCAA
CACTGGCCGCCCCCCTGTACCCCCGACCAAGGAAAGTGGAGAATTTAGAT
GGACATCAGAACATCAGAAAGCCTTTGAAAATATTAAAGAGGCCCTGCTG
ACTGTGCCAGCCTTGGCACTGCCAGATCTAACCAAGCCCTTCATCCTCTA
TGTTGATGAGAGGGTGGGGGTGGCCAGAGGAGTTCTTACTCAGGCTCTAG
GGCCGTGGGAGAGGCCGGTGACATATTTGTCTAAGAAGCTGGACCCAGTG
GCCAGCGGATGACCCACATGTTTAAAGGCCGTTGCTACAGTAGCCCTACT
CGTTAAGGATGCTGACAAATTAACTCTGGGACAGCAAATAACTGTGGTAG
CCCCCCACTCTCTTGAAAGCATTATCCGTCAGCCCCCAGACCGATGGATG
ACAAATGCCTGGATGACTCACTACCAGAGGCTGCTGCTGACTGAACGGTC
GTGTTTGCTCCTCCTGCTATTCTCAACACTGCCTGCAAAGTGATCTACGT
GACCAGCCGTGGCCAGGTGTTCCAAACTGGTACATAGACGGAAGCAGTTT
CCTAGTGGAAGTTTTTGTAGATACCTTTTCAGGATGGGTGGAGGCCTACC
CAACAAAAAAGAAACTGCCA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAAGCTAGAACAAAATGGAAGTACT
TTGGGCAGTTCGGGTAATGATATTCATATGTGGGCTATAGAGATGGCTCA
GTGGTTCAGAACACTGGTTCTGGCAGGTGACCCAGGTTCACAACCATTTG
TGACTCTAGTTCCAGGAGACTCAACTTCTGACCTCCTTAGGCACCAGGCA
CACACAGTGGTGCATGTACATATACACAGGCAAAATGCTTGTATAAAATA
AATAAAAATTAAAAATAAAATATTAGTAAAGCTATCAGAATATGCTGAGC
ACAGAGTGAGAGTTGAATAATTAGCCTTTATATTTTTTCTCATGCCCTAA
TTATCTCATAAATAATGCTAAGTTTTTGCCAGATAACAAGTTATCTCTTC
TTCTCTATGGGTTAGGAGTTTGGGGTTGGTTTAGCTTGTCTTTGGACAAG
GAGGCATTGCTGTAGTCATTGGAAGGTTTGATTGAAGTTGCCATTTAGAT
GTTGGCTTACTCACTGGCCTGATGGCAAGCCCTTGCTCCTGACAGCTATG
GTCAGGAGCCCCCTGTGAGCTCTCCATCTCTCCTGGGCTGCAGGATCATG
CTAGCTTCCTTCAAAGTAAGTACCCCAGTAAAGAGAATCCAAAATGTTTG
ACTCAGTGGTTTACATTGTG

Query= MSMg01no216_m20.g1 MSMg01no216_m20.g1 CHROMAT_FILE:
MSMg01no216_m20.g1 PHD_FILE: MSMg01no216_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:57 2005
         (561 letters)



>mm_chr4_108008100_108009060
          Length = 961

 Score = 1046 bits (541), Expect = 0.0
 Identities = 556/561 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataagctagaacaaaatggaagtactttgggcagttcgggtaatgatattcatatgtgg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 201 cataagctagaacaaaatggaagtactttgggcagttcgggtaaagatattaatatgtgg 260

                                                                       
Query: 61  gctatagagatggctcagtggttcagaacactggttctggcaggtgacccaggttcacaa 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gctatagagatggctcagtggttcagagcactggttctggcaggtgacccaggttcacaa 320

                                                                       
Query: 121 ccatttgtgactctagttccaggagactcaacttctgacctccttaggcaccaggcacac 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ccatttgtgactctagttccaggagactcaacttatgacctccttaggcaccaggcacac 380

                                                                       
Query: 181 acagtggtgcatgtacatatacacaggcaaaatgcttgtataaaataaataaaaattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtggtgcatgtacatatacacaggcaaaatgcttgtataaaataaataaaaattaaa 440

                                                                       
Query: 241 aataaaatattagtaaagctatcagaatatgctgagcacagagtgagagttgaataatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaaatattagtaaagctatcagaatatgctgagcacagagtgagagttgaataatta 500

                                                                       
Query: 301 gcctttatattttttctcatgccctaattatctcataaataatgctaagtttttgccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctttatattttttctcatgccctaattatctcataaataatgctaagtttttgccaga 560

                                                                       
Query: 361 taacaagttatctcttcttctctatgggttaggagtttggggttggtttagcttgtcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacaagttatctcttcttctctatgggttaggagtttggggttggtttagcttgtcttt 620

                                                                       
Query: 421 ggacaaggaggcattgctgtagtcattggaaggtttgattgaagttgccatttagatgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggacaaggaggcattgctgtagtcattggaaggtttgattgaagttgccatttagatgtt 680

                                                                       
Query: 481 ggcttactcactggcctgatggcaagcccttgctcctgacagctatggtcaggagccccc 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 ggcttactcactggcctgatggcaaggccttgctcctgacagctatggtcaggagccccc 740

                                
Query: 541 tgtgagctctccatctctcct 561
           |||||||||||||||||||||
Sbjct: 741 tgtgagctctccatctctcct 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)