Query= MSMg01no217_g15.b1 MSMg01no217_g15.b1 CHROMAT_FILE:
MSMg01no217_g15.b1 PHD_FILE: MSMg01no217_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:56 2005
(263 letters)
>mm_chr4_94916509_94917174
Length = 666
Score = 435 bits (225), Expect = e-126
Identities = 251/261 (96%), Gaps = 3/261 (1%)
Strand = Plus / Plus
Query: 1 tttttaagatctttgtctggcattcttttgtctacagtgcagagacaaagaaaagctgta 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttgagatctttgtctggcattcttttgtctacagtgcagagacaaagaaaagctgta 260
Query: 61 catgccacgatgctcttcttggcttttccttgccctcagctggggacaaagagacatcac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgccacgatgctcttcttggcttttccttgccctcagctggggacaaagagacatcaa 320
Query: 121 accaaaacaaaacctggggcattttttttt---aaacacaacctttttctctttattcat 177
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 accaaaacaaaacctggggcattttttttttttaaacacaacctttttctctttattcag 380
Query: 178 tttcattcatgagaccagctaaaggctgtttcttttctgtttcccactgcttcctcttta 237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tttcattcatgagaccagctaaaggctgtttctggcctgtttcccactgcttcctcttta 440
Query: 238 tcagcacagtttagggctctt 258
||||||||||||||||||||
Sbjct: 441 gcagcacagtttagggctctt 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 666
Length adjustment: 9
Effective length of query: 254
Effective length of database: 657
Effective search space: 166878
Effective search space used: 166878
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no217_g15.g1 MSMg01no217_g15.g1 CHROMAT_FILE:
MSMg01no217_g15.g1 PHD_FILE: MSMg01no217_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:57 2005
(306 letters)
>mm_chr4_95000616_95001321
Length = 706
Score = 592 bits (306), Expect = e-173
Identities = 306/306 (100%)
Strand = Plus / Minus
Query: 1 ccttagctggtagccctaggcttctgatatagatccagctggctgaagtgagggagaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccttagctggtagccctaggcttctgatatagatccagctggctgaagtgagggagaagc 447
Query: 61 tgaagtactgctggccttatcagtgggaaacctcaaggtgtggtggaaagtgtctttatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgaagtactgctggccttatcagtgggaaacctcaaggtgtggtggaaagtgtctttatt 387
Query: 121 tttcctgccctgcccttttctcctagagttccaggacagccctgaggtatcttgacagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttcctgccctgcccttttctcctagagttccaggacagccctgaggtatcttgacagaa 327
Query: 181 tctaaggtagtcaaagcagtgaggagccaaacaaagagtgagctatagcaaggtgaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tctaaggtagtcaaagcagtgaggagccaaacaaagagtgagctatagcaaggtgaggat 267
Query: 241 attaaccaacaaatgtccattgtacatttacaaagtactcaatattttgttgaatcttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attaaccaacaaatgtccattgtacatttacaaagtactcaatattttgttgaatcttct 207
Query: 301 tggtat 306
||||||
Sbjct: 206 tggtat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
