BAC Information

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BAC

Clone NameMSMg01-217H06
Chromosome4 (Build37)
Map Location 52,090,897 - 52,091,204
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666681, LOC100040814, LOC384015
Downstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217H06.T7 (MSMg01no217_h06.b1)MSMg01-217H06.TJ (MSMg01no217_h06.g1)
ACCAG396976AG396977
length703766
length of high quality
(start - end)
317 (47 - 363)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no217_h06.b1 PHD_FILE: MSMg01no217_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:01 2005CHROMAT_FILE: MSMg01no217_h06.g1 PHD_FILE: MSMg01no217_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTTCTCAAAAGTCTGAAATTTAACATATTACTGTTTTGGCTGT
TAAATTTCTTGACAATATATTTTGAACTTTGTGGTTTTTTTTTTATTACG
TATTTTCCTCAATTACATTTATAATGCTATCCCAAAAGTCCTCCATACCC
TCCCCACCACGTCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCATTC
CCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTGC
AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG
AGCTCTGGTTTATTTGTTATTTCACCCCTCAACCCTTTTTTTAAACTTCT
TAGGACAAATCACTTCTGGCACCCCCAAAATAATTTTTATTATTAGGTAT
TCATTTCATTTACATTCCCAATGCTATCCCAAAAGTCCCCCACCCACTCT
TCCACCCCCCCCTACTTCTTGGTCCTGGCATTCCCCTGTACTGTTTCATA
TATAGTTTGCACAACCAATGGACCTCTCTTCTCATTGATTGGTGATTACC
TCATCCTTTGATACTTATGCTGCCCGAGACTTTACCTTCTGCCGGCATTG
CTTAGCCCATATTGTTGTTCTCTTTTCTACCGCTGCCCATCCTCTTTCTT
TTT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGAGTTAGCACTGAGAGTAGAATCCT
CTCTATTACTAAAAGAGATTTACAACATGAGAAAGGAGAATTTCTTTGGG
ATTTGAGCCACAATTATATTGCAAGCTTCTTAGCTTTACTACATTGATGT
TAATAAAATGCATTTTCTTATCATATTTTCTGAATTCACCAGAATCCAAT
ATAAGCATGACAAAAAACAAACAAAAAACAAACAAACAAACAAACAAACA
AAAATACCTGTCTCATTTTCTCTCTTACCTCAGTCATCAGAAGACTGATA
ATAGTGGTGAGAAAATATTATAATGCGCCCCACCCGTAAATGAATAGATG
CAGAATGAGGTGTATTGCTGGGCTGTGTCTTTCTCTTCTCTATATTTACT
GTTGTACTTTTTGTTTCTACAGTACTGAGAGTTAAACCTAAACTCTTGCA
TTTACTAAGCAAGTGCCTTGCCACTATGCTATACAGTCTTAGCATGTTTT
AAAAAAAAATGTTATATTTTGAAAAGTAGTCTCATTTAGTCTCTAAAGTG
AGCTTAAAAATTCTGCCTTAATTCAGGTTGGCCTTTAACCTGCAATCTTC
TTGCCCCAGACTCCAAGTACCCAGGCTTGTAAGACTATGCCATCAGGTCA
AGTTTCTTCTTTGTGTTTTATGCAAGCTTTTACTTTAATTTTAAAGTTCA
TATTGTTTCTGAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_h06.g1 MSMg01no217_h06.g1 CHROMAT_FILE:
MSMg01no217_h06.g1 PHD_FILE: MSMg01no217_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:01 2005
         (293 letters)



>mm_chr4_52090697_52091389
          Length = 693

 Score =  514 bits (266), Expect = e-150
 Identities = 293/308 (95%), Gaps = 15/308 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagttagcactgagagtagaatcctctctattactaaaagagatttacaacatgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagttagcactgagagtagaatcctctctattactaaaagagatttacaacatgagaa 260

                                                                       
Query: 61  aggagaatttctttgggatttgagccacaattatattgcaagcttcttagctttactaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagaatttctttgggatttgagccacaattatattgcaagcttcttagctttactaca 320

                                                                       
Query: 121 ttgatgttaataaaatgcattttcttatcatattttctgaattcaccagaatccaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgatgttaataaaatgcattttcttatcatattttctgaattcaccagaatccaatata 380

                                                                       
Query: 181 agcatgacaaaaaa-caaacaaaaaa----caaa-caaacaaa----caaacaaa----c 226
           |||||||||||||| |||||||||||    |||| ||||||||    ||||||||    |
Sbjct: 381 agcatgacaaaaaaacaaacaaaaaaaaaacaaaacaaacaaaaaaacaaacaaagaaac 440

                                                                       
Query: 227 aaaaa-tacctgtctcattttctctcttacctcagtcatcagaagactgataatagtggt 285
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaatacctgtctcattttctctcttacctcagtcatcagaagactgataatagtggt 500

                   
Query: 286 gagaaaat 293
           ||||||||
Sbjct: 501 gagaaaat 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)