BAC Information

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BAC

Clone NameMSMg01-218B24
Chromosome4 (Build37)
Map Location 132,200,616 - 132,200,904
singlet/doubletsinglet
Overlap geneEya3
Upstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr
Downstream geneXkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218B24.T7 (MSMg01no218_b24.b1)MSMg01-218B24.TJ (MSMg01no218_b24.g1)
ACCAG397409AG397410
length713747
length of high quality
(start - end)
317 (47 - 363)291 (126 - 416)
definitionCHROMAT_FILE: MSMg01no218_b24.b1 PHD_FILE: MSMg01no218_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:03 2005CHROMAT_FILE: MSMg01no218_b24.g1 PHD_FILE: MSMg01no218_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGGCTGGAGAGATGGCTCAGTAGTTAAGAGCACTGACTGCTC
TTCTGATGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGCCTCACAAC
CATCCGTAATGAGATCTGATGCCCTCTTATGGTGCATCTGAACTCAGCTA
CAGTGTACTTAGATATAATAATAAATAAATCTTAAAAAAAAAAAAAGGAA
TTCCAGGGCTGGAGAGATGGCTTAGTGATTAAGAGCACTGACTGCTCTTC
TGAAGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCAT
CGGTAGTGGGGTCTGGTTCCCTCTTCTGGCGNGCACAGTGTACTCACATA
TAATAAATAANTCTCGGAGGCCCCCCACTCAAAAAACTGGATGGCTCAGC
GGTTAAGAGCACGTGTTTGCCCTTGCAGAGGACCACAGTCCACAGTTCCG
TTCCCAGCACCCAGGTTGAGAGGCTCACAATTGCCTGTTAACTCCAGTCC
CAGAGGATCCCACACTTCTGGCCCCCACAAGCATTTGCACTCACAAGTGA
ACAAACACTCTTACATACACTTGATTAAAAATAACAAAAAGAAATTTGTA
AGAAAAAAAACAAAAACCCAGGATCCCATAGCAGCACCTGCAAGTGTCTT
CAGGGTCTTCCTG
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTACAACTGAACTATAAAAATCTGTAGT
AAAGAAGATAGAAAGATAAGCCCGAATAAGAAAGAAAGGTGAGTTCAGGT
GGGCCTGGTGCCTGTGCCTACAGTCCCAGGACTCAGGCCACAGCAGGAAA
ATGAGCCTGGGCCACACAGCAAGACCTCATCTTCTTGTGGGTGCGTGCAC
CCTATTGCAGGTGCCCTCCGAGGCCACAGCATTAGAGTCCTGCTGGAGCT
AGAGTTGCAGGCAGTTGTGTTCTGTTGGACATGGAGCTGGGAACTGAACA
TGGACTCTTAATTGTTAAGTCATTTCTCCAGCCTCTGGGTTTACTAGGCT
TTGTCCTCCATTTTCCCCCCGATTTTAGCTGAATAATTATGTAAAACAAT
GGAGAGGAGCCCCTACTGCACCATGCTTTTGACTGCAGTATACCAGCAGA
GCATACAATCCTTATTCTTTGGAGGCACTATTAGGCAAATCCAGAGTTAG
GGGTCATCCACAACTACAAACTGAGTTCAAGCCCAGCGTCTGCTACTTGA
GATCTTGTCTTAAAAAACAACGAGAGGAGTGGCTGTCATCAGATGATTTA
CGTAAATGAAAGTGTCATAGTGAAATCCACTCTGTGTATAATGTATATTT
GTATTTTCATGCGTATGTGCGTATAGCCTATTGATCTTTTGTGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_b24.g1 MSMg01no218_b24.g1 CHROMAT_FILE:
MSMg01no218_b24.g1 PHD_FILE: MSMg01no218_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:03 2005
         (291 letters)



>mm_chr4_132200416_132201106
          Length = 691

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagaaagaaaggtgagttcaggtgggcctggtgcctgtgcctacagtcccaggactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagaaagaaaggtgagttcaggtgggcctggtgcctgtgcctacagtcccaggactca 260

                                                                       
Query: 61  ggccacagcaggaaaatgagcctgggccacacagcaagacctcatcttcttgtgggtgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccacagcaggaaaatgagcctgggccacacagcaagacctcatcttcttgtgggtgcg 320

                                                                       
Query: 121 tgcaccctattgcaggtgccctccgaggccacagcattagagtcctgctggagctagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaccctattgcaggtgccctccgaggccacagcattagagtcctgctggagctagagt 380

                                                                       
Query: 181 tgcaggcagttgtgttctgttggacatggagctgggaactgaacatggactcttaattgt 240
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaggcagttgtgagctgttggacatggagctgggaactgaacatggactcttaattgt 440

                                                            
Query: 241 taagtcatttctccagcctctgggtttactaggctttgtcctccatttt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagtcatttctccagcctctgggtttactaggctttgtcctccatttt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)