BAC Information

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BAC

Clone NameMSMg01-218G04
Chromosome4 (Build37)
Map Location 132,722,127 - 132,841,570
singlet/doubletdoublet
Overlap geneWasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990
Upstream geneYthdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932
Downstream geneLOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218G04.T7 (MSMg01no218_g04.b1)MSMg01-218G04.TJ (MSMg01no218_g04.g1)
ACCAG397574AG397575
length778770
length of high quality
(start - end)
320 (42 - 361)297 (68 - 364)
definitionCHROMAT_FILE: MSMg01no218_g04.b1 PHD_FILE: MSMg01no218_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:23 2005CHROMAT_FILE: MSMg01no218_g04.g1 PHD_FILE: MSMg01no218_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,841,255 - 132,841,570)(132,722,127 - 132,722,423)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTCTTTCAGGGAACTCCATCTCACTTCCAGCCCTCATGTGGTGGCTCAG
AACCATCTGTAACTCTAGTTCCAGGGGATCCAACGTGCTCTTCTGGCCTC
TAAGGACACTAAGCACACACACAGTGCACAGATAAACATACAGGCAAAAT
AACAAAAATGTTAAGTCATTGTCTTAGCATGCCCAAGGCCCTGGGTTTTT
ATCTTCACTAAAACACTACATTTTCTTATGTTAGTACTCCTGATATGTGT
TTCAGCTTTTCGGTATGCCTGGTATTGGGCTGGCCACTAGCTCAATAAGA
ATGCACACAATATTTTTCTTTCCCCCCCCCCGATTCCTGGTTCCTGACTG
TTCCTGCCAGCTCACACCTTCCAGATATATAAGAAAGATGTGGAATAGCA
AGTTAGGGGATTGTATTTGGCCCCTGAGCATTGGCCTTCAATGGGAAACA
AGATCCCCTTAGGTACTGTTCAATCGATGTCTCCGACCGTGTGTCAGGCT
CAGGCCTAAGGATAGCAATGTGGACACGGGGCAATGTAAAGGTTGCTGCT
ATTCAGGGTCAATGCAGGAATATTGGAAAGAGACCTGCCGGCTGTAGCTT
AGGCTTCCATAAGCAGTACTGAATGTCTCTCTTTAAACTGGACCTCCAGG
CTTCCTGGGAATACGGCCTTATAAGCCCTTATTATTGTCTGCAACTTATA
TACAACCTTTTATATTACTTCCACCCCC
TGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTATTCCAGAAATTCTTGTTGCAGGATGGCAGAATAGAATCATTGG
TATGAACGTGCATGGCACCCTGCTCCATAATTCTGCTCCCTGTTGCTCGG
CTGTAGCTGAGATTGCTAGGTCTCTCCCCTGTCTCCTGGTGTACAGTCAC
TCTCCAGACTGCTGCATCTGCTTGCTCCATGACCACACGGTGTGTTTGTG
GATTGCCCTGAGCTGTCAGCAAAACATTTTGCTGAATTTTCTTTTTTGGT
GTTGCGCTGCAGCCTTCTTTTCCGTGGCCTTTCTCAGTTGTGTGAAGTTA
GTTACTTTTTTGGCTGCCCACCCCCAGAGAGGGAACAGTTACTGCATCTT
ATATCTCAAATCCCACCCCGATTAATCACGTAGCTTAAACTGATTCGCTA
GAGAGTTGCTTGGATGATGAGATCCCCGTGTCTGATGATCATTTTATAAG
TCTCCTGATGCACTCCTCCCCTTCTTTATTCTCTCAGTACTGTATCCCAG
CCCATACAACGGTAACTTCATTGCCCTTGTGCTATAGTTTTTCTCTGATT
TCCACTCTTTCCTCCCTCTCTATATGTTTTGTGTTTTATGATTCGGAATT
ATCTCCTCATATCTGGTTTTTTCCTCCCTAATTTCTGCCACACCTAATCT
TGGTCCTTTATCCATTTGGTTTTAAATACCTATCACCCCCCTGAATTTGT
CCCACCGTTTTATTTCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_g04.b1 MSMg01no218_g04.b1 CHROMAT_FILE:
MSMg01no218_g04.b1 PHD_FILE: MSMg01no218_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:23 2005
         (320 letters)



>mm_chr4_132840895_132841614
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctttcagggaactccatctcacttccagccctcatgtggtggctcagaacca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattcctctttcagggaactccatctcacttccagccctcatgtggtggctcagaacca 617

                                                                       
Query: 65  tctgtaactctagttccaggggatccaacgtgctcttctggcctctaaggacactaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tctgtaactctagttccaggggatccaacgtgctcttctggcctctaaggacactaagca 557

                                                                       
Query: 125 cacacacagtgcacagataaacatacaggcaaaataacaaaaatgttaagtcattgtctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cacacacagtgcacagataaacatacaggcaaaataacaaaaatgttaagtcattgtctt 497

                                                                       
Query: 185 agcatgcccaaggccctgggtttttatcttcactaaaacactacattttcttatgttagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agcatgcccaaggccctgggtttttatcttcactaaaacactacattttcttatgttagt 437

                                                                       
Query: 245 actcctgatatgtgtttcagcttttcggtatgcctggtattgggctggccactagctcaa 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 436 actcctgatatgtgtttcagcttttcggtatgcctggcattgggctggccactagctcaa 377

                           
Query: 305 taagaatgcacacaat 320
           ||||||||||||||||
Sbjct: 376 taagaatgcacacaat 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no218_g04.g1 MSMg01no218_g04.g1 CHROMAT_FILE:
MSMg01no218_g04.g1 PHD_FILE: MSMg01no218_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:23 2005
         (297 letters)



>mm_chr4_132721927_132722623
          Length = 697

 Score =  551 bits (285), Expect = e-161
 Identities = 294/297 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgttgcaggatggcagaatagaatcattggtatgaacgtgcatggcaccctgctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 201 tcttgttgcaggatggcagaatagaatcattggtatgaacgtgcatggcagtttgctcca 260

                                                                       
Query: 61  taattctgctccctgttgctcggctgtagctgagattgctaggtctctcccctgtctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattctgctccctgttgctcggctgtagctgagattgctaggtctctcccctgtctcct 320

                                                                       
Query: 121 ggtgtacagtcactctccagactgctgcatctgcttgctccatgaccacacggtgtgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtacagtcactctccagactgctgcatctgcttgctccatgaccacacggtgtgttt 380

                                                                       
Query: 181 gtggattgccctgagctgtcagcaaaacattttgctgaattttcttttttggtgttgcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggattgccctgagctgtcagcaaaacattttgctgaattttcttttttggtgttgcgc 440

                                                                    
Query: 241 tgcagccttcttttccgtggcctttctcagttgtgtgaagttagttacttttttggc 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagccttcttttccgtggcctttctcagttgtgtgaagttagttacttttttggc 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)