Query= MSMg01no218_h02.b1 MSMg01no218_h02.b1 CHROMAT_FILE:
MSMg01no218_h02.b1 PHD_FILE: MSMg01no218_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:27 2005
(319 letters)
>mm_chr4_45046465_45047183
Length = 719
Score = 598 bits (309), Expect = e-175
Identities = 312/313 (99%)
Strand = Plus / Minus
Query: 5 gaattcagagctgaagggctccctctcagggtctccatctcactcagaggctgttcctct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcagagctgaagggctccctctcagggtctccatctcactcagaggctgttcctct 458
Query: 65 agccctgcccaggggcctctctgaagacaaacagtgacactccttcattggggtcacctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agccctgcccaggggcctctctgaagacaaacagtgacactccttcattggggtcacctg 398
Query: 125 ctgagcaaagggtcttaagatacaagagcacaccttcctgggcgtgggttactcgctcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctgagcaaagggtcttaagatacaagagcacaccttcctgggcgtgggttactcgctcag 338
Query: 185 catcttagtttttgctgtactcacctgagggttagtcctgttttagtatttagacttttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 catcttagtttttgctgtactcacctgagggttagtcctgttttagtatttagacttttt 278
Query: 245 acattcattttgtgtgtgtgcatgcagagggcagaggaccacctttggagaagttggctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acattcattttgtgtgtgtgcatgcagagggcagaggaccacctttggagaagttggctc 218
Query: 305 ttcacccatgtcg 317
||| |||||||||
Sbjct: 217 ttctcccatgtcg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_h02.g1 MSMg01no218_h02.g1 CHROMAT_FILE:
MSMg01no218_h02.g1 PHD_FILE: MSMg01no218_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:27 2005
(275 letters)
>mm_chr4_45009129_45009805
Length = 677
Score = 445 bits (230), Expect = e-129
Identities = 272/304 (89%), Gaps = 29/304 (9%)
Strand = Plus / Plus
Query: 1 aaaagctaaaaaataaaataaaatcagggcgcacaaaggtaaatgtacagcggttaatac 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 174 aaaagctaaaaaataaaataaaatcagggcgtacaaaggtaaatgtacagcggttaatac 233
Query: 61 tgagctggagctgggatggcaggacccagagtgtgacagttg------------------ 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tgagctggagctgggatggcaggacccagagtgtgacagttgtgtcccagtgtcctaact 293
Query: 103 ---------ctacaaggacatggattacatggatagaatgtttacagtaataaattatac 153
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tacaaactgctacaaggacatggattacatggatagaatgtttacagtaataaattatac 353
Query: 154 attatagcaccaaaaccaatagactgtaccttaaaaataaca--aaataataaggaagga 211
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 354 attatagcgccaaaaccaatagactgtaccttaaaaataacagaaaataataaggaagga 413
Query: 212 agtgagaccacaaatgagcttgacccaaagccacgctttcagaaatgacagggcacccac 271
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agtgaggccacaaatgagcttgacccaaagccacgctttcagaaatgacagggcacccac 473
Query: 272 agct 275
||||
Sbjct: 474 agct 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 677
Length adjustment: 9
Effective length of query: 266
Effective length of database: 668
Effective search space: 177688
Effective search space used: 177688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
