TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGATAGCCAGGGCTA
CACAGAGAAACCCTGTCTCGAAAAACAAAAACCAAACAAACAAACAAAAC
ATATAAACCAACCAGATCCCCCAGAACTCCCAGGGACTAAACCACCAATA
AAAGAGTACACATTAGAGGGATCAAAGGCTCCAGCTGCATGTGTAGCAGA
GGGTGGCCTGGTTGGACATCAATGGGAGGAGATGCCCTTGGTCCTGGGAA
GGCTCCATGTCCCAGGGTAGGGGGATGCCAGGGCAGAGAAGTGGGAGTCA
GTGGGAGGAGGGGGGAGTTTCCTCACACACACCCCGCCCAGGGGGAGTGG
GGAAGNNNNNNNNNNNNNNNNNCCCCCCCAAAAAAAAAAAAAAAAANCCC
GGGGGGGGGGGGGCCCNNNCCCCCCACCCACCACCACCGCCCACGCCGCA
GACAACCCAACAACCCGAACGCACAGAAAAACGAACAGAACCACCCAGCC
GCCAAGAAGAGACCACCCGCCGCCCGCCGCAGACCGCAAGCGAACACGCC
AGAAAGCACACGACACCAAAACACCAGACACGCACAGAAAGAAAACGACC
AACCGGGGCCCAAAGCCACACGAACGCGCAACCACCCACCAAGAACCACA
ACAACCAAGAACAAAGGAAACAGAAAGAACAGCGAACNGNCGGG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCTGGGATAATATTATTTATGGCCAATA
ACTTATGAATGAAAATGTATACCTCTGCACTGAAGTATTTAGTTGCTATC
TGAGACCCTAAAGCATTTTTTCCTCCAGCTGTAGTAAGAATCATTGCTTT
TTAGATACTATGCTGTGAAAATGGCATAATTTTTCCAGCTTGTGATATAA
ATAAATTGTTAAAGTAGAGCATGCCACTGACGCATGCTCCCTGAGCACCA
GGAGTGAGAAAGGGACACTAAGATGGAAAGGGAAAAGGAACCTTTGATGC
TTAATAAAAGGTATTTGTGAGGAATACACTAGAGCAAAGCCAGTTTTAGT
TCTTAGAGTTATAATTTCTATATAATATCAATATTGAGTTACAAATTTAG
GAATGATTTTCATAATACCTTATTTGGAAATTTTTAATAAAATTTTAATT
TAAAAATTTTACTTTTAATGTGAGTAAGTTAAAATTCCAAAATGAAATGC
TTTTAGATTTATTCTGCAGACCTCAAATTCAACAAGCATCCATATAGAAG
TGATATATAAGCAAAAGCAGAAATCAGAGATGTGGCTACAGAGTAAAGGA
GGCTAAGGAATACCTGCTTTTTAGGTCTTCAAAGGTAGGACATCCCTAAA
AATGCCTTGATTTCAGACATCTGGCTTCCAGAA

Query= MSMg01no218_j24.g1 MSMg01no218_j24.g1 CHROMAT_FILE:
MSMg01no218_j24.g1 PHD_FILE: MSMg01no218_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:42 2005
         (609 letters)



>mm_chr4_110562684_110563692
          Length = 1009

 Score =  969 bits (501), Expect = 0.0
 Identities = 540/553 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcactgaagtatttagttgctatctgagaccctaaagcattttttcctccagctgtag 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctgcactgaagtatttagctgctatctgagaccctaaagcattttttcctccagctgtag 494

                                                                       
Query: 61  taagaatcattgctttttagatactatgctgtgaaaatggcataatttttccagcttgtg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taagaatcattgcttttcagatactatgctgtgaaaatggcataatttttccagcttgtg 434

                                                                       
Query: 121 atataaataaattgttaaagtagagcatgccactgacgcatgctccctgagcaccaggag 180
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 433 atataaataaattattaaagtagaacatgccactgacgcatgctccctgagcaccaggag 374

                                                                       
Query: 181 tgagaaagggacactaagatggaaagggaaaaggaacctttgatgcttaataaaaggtat 240
           ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| 
Sbjct: 373 tgagaaagggacactaagatggaaagggaaaagcaacccttgatgcttaaaaaaaggtaa 314

                                                                       
Query: 241 ttgtgaggaatacactagagcaaagccagttttagttcttagagttataatttctatata 300
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atgtgaggaatagactagagcaaagccagttttagttcttagagttataatttctatata 254

                                                                       
Query: 301 atatcaatattgagttacaaatttaggaatgattttcataataccttatttggaaatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atatcaatattgagttacaaatttaggaatgattttcataataccttatttggaaatttt 194

                                                                       
Query: 361 taataaaattttaatttaaaaattttacttttaatgtgagtaagttaaaattccaaaatg 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 193 taataaaattttaatttaaaaattttacttttaatgtgattaagttaaaattccaaaatg 134

                                                                       
Query: 421 aaatgcttttagatttattctgcagacctcaaattcaacaagcatccatatagaagtgat 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 133 aaatgcttttagatttattctgcagacctcaaattcaacgagcatccatatagaagtgat 74

                                                                       
Query: 481 atataagcaaaagcagaaatcagagatgtggctacagagtaaaggaggctaaggaatacc 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 73  atataagcaaaagcagaaatcagagatgtggctacagagtgaaggaggctaaggaatacc 14

                        
Query: 541 tgctttttaggtc 553
           |||||||||||||
Sbjct: 13  tgctttttaggtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)