BAC Information

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BAC

Clone NameMSMg01-218O14
Chromosome4 (Build37)
Map Location 17,293,696 - 17,404,022
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383994, LOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218O14.T7 (MSMg01no218_o14.b1)MSMg01-218O14.TJ (MSMg01no218_o14.g1)
ACCAG397905AG397906
length732715
length of high quality
(start - end)		315 (50 - 364)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no218_o14.b1 PHD_FILE: MSMg01no218_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:03 2005CHROMAT_FILE: MSMg01no218_o14.g1 PHD_FILE: MSMg01no218_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,293,696 - 17,294,004)(17,403,738 - 17,404,022)
sequence
NAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTATCTGACTTTAGGCTCATATTAAATTCCAGAATGATTC
TGAGGTGATAAGACCACCCAATAACATCCAGGTTGGTATGAGCTGTTCCT
TTGCTCTTCATTTACCAAGGCCAGTTGCAGTTTTCTGCCTGTCAGAGGCT
CGTTCTCTTGCTCTTTAAAATTGCTTCCCAGAGCTGACTCTTATCAGGGT
GAATTAAATTTGGGCTCTGCTTCTTGAGGTTATTCTTTGTAATTCTTAAT
GACAGGTTCTTCCTCAAGATGGAGCCCAGCTTCTGCCCTCAGAGTCATGT
ACTTGACAATGTTTGATTCNNGTTTANTCCTGANCGATCCCCTCTAGGAA
TCCTGTCTCACTAAACTACCCCACCGAAAAAGAAAAATGTGAGAGCTGTG
GTTTTGTCCTGTGGTTAGATCTTCCCATCTGTTTTCAGCAGAATTGCCCA
GGTTCCTTTTTGGATGAATTATTTGTTACCCTCTACCTGCTGAGGAGCCA
TGTGGTCATAGCCAGAGTTTGACTTTGTTTCTGTCTGTGTTCTCATGGTT
TTGATCAGCTTTCAGGGATCTGATAAATATGTTCATAAAATTCTGGAGCA
TTTCTTCCTTTCAATTTTCTGAAGACTTCTATTTGTCTTATTTTGAGCTT
GAATATGTCTTATAGAGTTTATCGATTTTATG

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGACAACAGAAAAGACCAATC
ACTATCAATGTAAAAGCACTCTCATGCAAGTCAATCCTGAAACTTCAACT
TAGTCAATCGAATCAATGCTACTCTAAATGGAAAGCTTCTCTCACGGGTT
ACTATCCACAGTATGCGTTCCTAAACCATATAGTTAATTGTTCTTACCTA
CTAAATAGTGAGATGGATTATTACACAGACAGAGGCAAGCACAGAGATTC
CATATTTTCATTTTCTGAAACACAGAATTCTACAGAGTAAATGCAGGAAC
ATTCGGAGAGTCTTTTTTTACTCCCAGACCACCATGACATAGTTAACCAA
AAGAATTAGGGGAATGAACTCCAAAAGAATAAACATATCAAACTCAAAAC
AGGTAGATTGAAGTATATGTTCTCAACCAGATTGGAAAATACAATTTGAT
AATAAAATGCTAACATATAACTTTAATAGGGGACAGAGTATAAACTCTCT
TGCTTGACAAAATGAGCAGTTAGTAATTTATCATGCAGGTAACAAAGATC
TGATAACAAATTAAAATTTTTTAAATATGTGAATGACCCAACAAAGAAAC
CACTGAAGATGTTTTAGACTCAGGAATATTTTTTTTTTATTTCTTCTCAA
CAAGACATAATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_o14.b1 MSMg01no218_o14.b1 CHROMAT_FILE:
MSMg01no218_o14.b1 PHD_FILE: MSMg01no218_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:03 2005
         (315 letters)



>mm_chr4_17293492_17294206
          Length = 715

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactatctgactttaggctcatattaaattccagaatgattctgaggtgataaga 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatctgactttagactcatattaaattccagaatgattctgaggtgataaga 264

                                                                       
Query: 65  ccacccaataacatccaggttggtatgagctgttcctttgctcttcatttaccaaggcca 124
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 265 ccacccaataacatccaggttggtatgagctgttccttagctcttcagttaccaaggcca 324

                                                                       
Query: 125 gttgcagttttctgcctgtcagaggctcgttctcttgctctttaaaattgcttcccagag 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttgcagtgttctgcctgtcagaggctcgttctcttgctctttaaaattgcttcccagag 384

                                                                       
Query: 185 ctgactcttatcagggtgaattaaatttgggctctgcttcttgaggttattctttgtaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgactcttatcagggtgaattaaatttgggctctgcttcttgaggttattctttgtaat 444

                                                                       
Query: 245 tcttaatgacaggttcttcctcaagatggagcccagcttctgccctcagagtcatgtact 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 tcttaatgacaggttcttcctcaagatggagcccagcttctgccctcagagtcatgcact 504

                    
Query: 305 tgacaatgt 313
           |||||||||
Sbjct: 505 tgacaatgt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no218_o14.g1 MSMg01no218_o14.g1 CHROMAT_FILE:
MSMg01no218_o14.g1 PHD_FILE: MSMg01no218_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:03 2005
         (287 letters)



>mm_chr4_17403538_17404224
          Length = 687

 Score =  482 bits (249), Expect = e-140
 Identities = 276/285 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagacaacagaaaagaccaatcactatcaatgtaaaagcactctcatgcaagtcaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctagacaacagaaaagaccaatcactatcaatgtaaaagcactctcatgcaagtcaatcc 426

                                                                       
Query: 61  tgaaacttcaacttagtcaatcgaatcaatgctactctaaatggaaagcttctctcacgg 120
           |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |
Sbjct: 425 tgaaacttcaacttagtcaatcgaatcaatgctactctaaacagaaagcttctctcactg 366

                                                                       
Query: 121 gttactatccacagtatgcgttcctaaaccatatagttaattgttcttacctactaaata 180
           ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 365 gttaccattcacagtatgcgttcctaaaccatatagtaaattgttcttacctactaaaca 306

                                                                       
Query: 181 gtgagatggattattacacagacagaggcaagcacagagattccatattttcattttctg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 305 gtgagatggattattacacagacagaggcaagcacagcgattccatattttcattttctg 246

                                                        
Query: 241 aaacacagaattctacagagtaaatgcaggaacattcggagagtc 285
           |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 245 aaacacagaattctacagggtaaatgcaggaacattcggagagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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