CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGTTATCACTTAAGCTCAGTGACCCAGTTATGGCTTTATTGCCT
AAAAATCAAGAGTAAAACAGGACAACAGCTATAGCCCAGTGATAGAGTGA
ACAAGACCCACAGACACAAAGAACAAAATCAAAATTCTTAGTTAGGGTTA
TTATTGGTGTGATGAAACACTGTGACTAAAAGCAGGTTAGGGAAGAAAAT
GTTGACACCATAGTTCTTCATAGGAGGCAATCAGTCCAGCAACTCAAATA
GGGCAGGAATCTGAAGGCAGGAGCTGATGCAAAGGCCATGGACGAATGCT
GCTTACTGGATTATTGTCTATGACTTACTCACCCAACTTTCTTATAGAAC
TCAGGGCCAGCTCAGTAGTGGCCCTAACCACAATAGGCTGAGGCCCTCCT
CCATCAATTACTAATTAAGAAAATATCCTATATGCTCACTTGTCTACAGT
CTGATCTTATAAAGCCATTTTTTTTCTTGTTTTGTTTTGGTTTTTTTTTG
TTTTTTTTTTTGGTTTTTGGNTTTTCGTTNNNNNNNNNNNTTTTTNTTTC
AGTTTTTTTTTTTTTTTTTTTNTTTTTTTTTCGTTTTTTCTTTTTTTTTT
TTTTTTTTTTTTCGTTTTTTTCTTTTTNCTTTTTTCGTNTTTCTCTTCTC
CCTCTCTCTTTCTTCTCTCTTTCTCTCTTTCTTCTTCGTTTTN

GGGTGGGATTGGCAACCCCGCNNGNACNANAGAAGGATTGGCGGNCACNG
GGGGNAAGNCGNGGGCACAAACCNNGGCCACCACNAAGGCACATTTTTTT
CCTTATTCGGAGAATAGACTGTTTGTTGCTGCCACATACAGCGCTACAGC
AAGACAAGGAGCTGCCTGGGCCCATGCTGACTGCAATTCAGAAGACGCTC
CCTCTCTATCTACAGGTGTGCCGAGCGTGGAATCTTCCTCAAAGTCTAGT
CTGAAATTCAGATAGAAAAGCTAGACGTTTTAATCCCCGGAGNACATTTT
TCTACTTTTCGNANCCACNGAAAAAGGNNCAAAGGACTTTGTTTTTGTCC
CCCCCCACCCAGGCGAAAGAGGCAGGATCCTAAATGTGAGAGCTGATAAA
GGCCTTGAAAAAAGATGCTCACTGGCTTGTTTTATGTGGCTTGCTCAGCC
TGATGTCTTGTAGAACCGAGGATGACTAGCCCAGGAATGGGATCACCCAA
AATGTCCTGGGCCCTCACTCATCAGTCACTAAGTAAGAAAATGCCTTACA
GATGGCCTACAGCCAGGCATCAAGGAGTCATTTCCTCAACTGAGGCTCCT
TCCTCTCTGAAGACTCTAGCTTGTGTCAAGAAGACACCTTTTATTATTTT
GTTAACATAACCAAGACAAAGGAAAGAGCTTTTAAGAAAACAAAAAAAAA
ACCTAACATAATGGGGAAAGGCAAATG

Query= MSMg01no231_g02.b1 MSMg01no231_g02.b1 CHROMAT_FILE:
MSMg01no231_g02.b1 PHD_FILE: MSMg01no231_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:39 2005
         (526 letters)



>mm_chr4_24670378_24671303
          Length = 926

 Score =  580 bits (300), Expect = e-170
 Identities = 330/340 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagttatcacttaagctcagtgacccagttatggctttattgcctaaaaatcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaattctagttatcacttaagctcagtgacccagttatggctttattgcctaaaaatcaa 281

                                                                       
Query: 65  gagtaaaacaggacaacagctatagcccagtgatagagtgaacaagacccacagacacaa 124
           |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 280 gagtaaaacagggcaagagctatagcccagtgatagagtgaacaagacccacagccacaa 221

                                                                       
Query: 125 agaacaaaatcaaaattcttagttagggttattattggtgtgatgaaacactgtgactaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agaacaaaatcaaaattcttagttagggttattattggtgtgatgaaacactgtgactaa 161

                                                                       
Query: 185 aagcaggttagggaagaaaatgttgacaccatagttcttcataggaggcaatcagtccag 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aagcaggttagggaggaaaatgttgacaccatagttcttcataggaggcaatcagtccag 101

                                                                       
Query: 245 caactcaaatagggcaggaatctgaaggcaggagctgatgcaaaggccatggacgaatgc 304
            ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 100 gaactcaaatagggcaggaatcagaaggcaggagctgatgcaaaggccatggaagaatgc 41

                                                   
Query: 305 tgcttactggattattgtctatgacttactcacccaactt 344
           |||||||| |||||||||| |||||||||||| |||||||
Sbjct: 40  tgcttactcgattattgtccatgacttactcagccaactt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_g02.g1 MSMg01no231_g02.g1 CHROMAT_FILE:
MSMg01no231_g02.g1 PHD_FILE: MSMg01no231_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:39 2005
         (183 letters)



>mm_chr4_24515218_24515800
          Length = 583

 Score =  300 bits (155), Expect = 4e-86
 Identities = 173/179 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagactgtttgttgctgccacatacagcgctacagcaagacaaggagctgcctgggccc 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 201 atagactgtttgttgctgccacatacagtgctacagcaagacaaggagctgcctggaccc 260

                                                                       
Query: 61  atgctgactgcaattcagaagacgctccctctctatctacaggtgtgccgagcgtggaat 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 261 atgctgactgcaattcagaagacgcttcctctctatctacaggtgtgccgagcgtggaaa 320

                                                                      
Query: 121 cttcctcaaagtctagtctgaaattcagatagaaaagctagacgttttaatccccggag 179
           || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ctgcctcaaagtctagtctgaaattcagattgaaaagctagacgttttaatccccggag 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)