BAC Information

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BAC

Clone NameMSMg01-231H10
Chromosome4 (Build37)
Map Location 81,989,357 - 81,989,635
singlet/doubletsinglet
Overlap geneNfib
Upstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
Downstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231H10.T7 (MSMg01no231_h10.b1)MSMg01-231H10.TJ (MSMg01no231_h10.g1)
ACCAG398271AG398272
length722729
length of high quality
(start - end)
313 (46 - 358)285 (79 - 363)
definitionCHROMAT_FILE: MSMg01no231_h10.b1 PHD_FILE: MSMg01no231_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:46 2005CHROMAT_FILE: MSMg01no231_h10.g1 PHD_FILE: MSMg01no231_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGAACACAATTGTTATATATAAGATATACAAATACATGTGCCT
AAAACCAAATTATGAGGGCTGGGCTTAGAGACTTTTGCCTGAAAGTATCA
CAAGTGAAGTGGTTTTGAGGAGTAAATGTGAGGAATCAGGGGTGCAGGGG
TGACTGGCTACAAACCTGAAGGGTCCACTACCCTGTGTAAACTGACAATG
CTCTGCCAGTCTTGCATTTTATATTTTCTAGCAATTAGAGAATATGCTAA
GTAAATCATGCTGTTTGCTTATACATACCAGCATTATTTATAATAGCCAG
AAGCTGGAAAGTTTCTTTATGCCCCTCACCAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACCCCGCAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCANAACCTAGGAGTTTCTTAACAGGTTTCTTAACACA
TGATACCGTTATAGGTTAACTCAGATACGCTCTGAGGTTAAGACACCATA
ATATATTAAAGGTTCTCCTTTTGAGTAAAATTTTCAACTTGGCTGCTAAA
TGTTTTATTTTCAAGCACCTGT
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGA
AACTTATAGAGGAGAAAATAGGGAACACGCCTCGAAGATATGGGTACAGG
GGGAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA
TCTATATATGGGAACTCATAAAACTGCAAAGCTTTCTGGAAGGCAAAAGA
CACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTCA
CCTATCCCAAATCGGATAGGGGACTAATATCCAATATATATAAAGAACTC
AAGAAGGTGGACTCTTGATAATTCCCCCCACCCCCCTCAAAAATGGGGCT
CAGAACTGAACAAAGAATTCTCACCCGAAGAATAAAGAATGGCTGAGAAG
CACCTGAAAAAATGTCCAACATCCTTAATCATCAGGAAAATGCAAATCAA
AACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAA
ACTCAGGTGACAGCACATGCTGGCGAGGATGTGGAGAATAGGGAACACTC
CTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGATATCAAT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTATTGAAGGATCCCGCAA
TACCTCTCCTGTGCATATATCCAGATGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_h10.b1 MSMg01no231_h10.b1 CHROMAT_FILE:
MSMg01no231_h10.b1 PHD_FILE: MSMg01no231_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:46 2005
         (313 letters)



>mm_chr4_81989158_81989870
          Length = 713

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagaacacaattgttatatataagatatacaaatacatgtgcctaaaaccaaa 64
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 478 gaattctcagaacacaattgttatatataagatatacaaatacacgtgcctaaaaccaaa 419

                                                                       
Query: 65  ttatgagggctgggcttagagacttttgcctgaaagtatcacaagtgaagtggttttgag 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttatgagggctgggattagagacttttgcctgaaagtatcacaagtgaagtggttttgag 359

                                                                       
Query: 125 gagtaaatgtgaggaatcaggggtgcaggggtgactggctacaaacctgaagggtccact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagtaaatgtgaggaatcaggggtgcaggggtgactggctacaaacctgaagggtccact 299

                                                                       
Query: 185 accctgtgtaaactgacaatgctctgccagtcttgcattttatattttctagcaattaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 accctgtgtaaactgacaatgctctgccagtcttgcattttatattttctagcaattaga 239

                                                  
Query: 245 gaatatgctaagtaaatcatgctgtttgcttatacatac 283
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaatatgctaagtaaatcatgctgtttgcttatacatac 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)