BAC Information

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BAC

Clone NameMSMg01-231P05
Chromosome4 (Build37)
Map Location 142,962,776 - 142,963,062
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38
Downstream geneLOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231P05.T7 (MSMg01no231_p05.b1)MSMg01-231P05.TJ (MSMg01no231_p05.g1)
ACCAG398613AG398614
length686779
length of high quality
(start - end)
320 (5 - 324)286 (130 - 415)
definitionCHROMAT_FILE: MSMg01no231_p05.b1 PHD_FILE: MSMg01no231_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:20 2005CHROMAT_FILE: MSMg01no231_p05.g1 PHD_FILE: MSMg01no231_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGATCCGCGGAATTCACTTCTGAACAACAGGATGTAAGCCAAAACGAG
AGAGAGACTGAGCCTGGCATGCATGGCCTGTGAACCCTCCACTCCTATCC
CCAGTGACAAATCTCCTCCAACAAGGCCACACCTCCTTCAACAAGGCCAC
ACCTCCTCCAGCACAGCCACACCTCCTCCAGCAAGGCCACACCTTCCCCC
AACAAGGTCACACCCCCCTGATCCTTCCCAAACAATTCCACTAATTGGGA
GCCAGACATTCAAATACAATATGGGGGCCATTCTCATCTAAATCACCACA
GAGATATTCAGTAATGAAATTGTTTTTTACACCGCGCCCACTCATTTTGT
TAAAAAAAAAAAAAGAATCCCAATGTTTCCCACACACCCAAATAATTATT
GATGAAATTACGCAATACCAGCGAAAAATGTGTGAATTTGCGGTCTAGGA
GTAGAGATTTTTCTGTGTGTTTGGAGACAGGATCTCACACTGTAGCTCAG
GATTTCCTTGAATTGCCAGTTAATCTTTCCCTCAGTCCCAGAAGTACTGT
GATGACAGACATAAGTCATCAATGTTTGGCTCCAAAAATATTATCATGGG
GGCAGGGAGTGATCCCTGATATAAGATTACCCCTGTTTGGCACATTGGTG
TGGGACAAACCCCAAAAGAAACTACCCCAGATTACT
CCTCTCTTCCCTCCCCTTTCCTCGTTTTCCTCTCTTCNNACTCCCNNCCN
NCATCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGCTATACA
GAGAAACAACCCTGTCTCGAAAAACCACCAAAAAAAAAAAAGGAGTGATT
GAGAGTCTGACTAGAAGAAAAGAAAGAGGAGAGGGAGGCTAGGAAAGTAA
GAGAAGGGGGGACCATGAGATTTAGCTTGAAGCCATCCAATACAGAAGCC
TCTGGGAGATTGTGGTTAGCTTCATGTGTCAAGTTGACTGGGCTGTAAAG
TGCTCAGATGTGTGCTTAGTCCCAAGTGTGTCTACTGCAGCTATTTCTAG
CCAAATCAACACTTATTTCTATTTGATCCCCCCCCACTGACGTTGGTATC
AGTCAATCCATCCGGGGTCTGAGTCCCCCCCACAAAAAAAAGAGGATAAA
CTCACTCTCCCTGACTGCTGAACTAAGCCTTCTACAGCCCTGGTTTGGGA
CTGCAGCATCAACTCTCCTGTCTCCAGCTTGCCAACTGCAAATCGTGGCA
CTTGTCCTCACCCACCTATGTGATCCCGGTTTCTTGAGTCCATCTCTTGA
ATATGGCGTCTCTTGTATGCCTTGTTTCCCTGGAGATCCCTGATGCACAT
AGCATCTGGCTGCACTGGAACGCCCCCTATGAGCTATTCTCTGTCCTGAG
ACCTTATTTATCCCCCCTTAAGAAGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_p05.g1 MSMg01no231_p05.g1 CHROMAT_FILE:
MSMg01no231_p05.g1 PHD_FILE: MSMg01no231_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:20 2005
         (286 letters)



>mm_chr4_142962629_142963315
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 282/289 (97%), Gaps = 5/289 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccaaggctatacagagaaacaaccctgtctcgaaaaaccaccaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 434 caggacagccaaggctatacagagaaacaaccctgtctcgaaaaacca--aaaaaaaaaa 377

                                                                       
Query: 61  aa---ggagtgattgagagtctgactagaagaaaagaaagaggagagggaggctaggaaa 117
           ||   || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaaagggggtgattgagagtctgactagaagaaaagaaagaggagagggaggctaggaaa 317

                                                                       
Query: 118 gtaagagaaggggggaccatgagatttagcttgaagccatccaatacagaagcctctggg 177
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtaagagaaggagggaccatgagatttagcttgaagccatccaatacagaagcctctggg 257

                                                                       
Query: 178 agattgtggttagcttcatgtgtcaagttgactgggctgtaaagtgctcagatgtgtgct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agattgtggttagcttcatgtgtcaagttgactgggctgtaaagtgctcagatgtgtgct 197

                                                            
Query: 238 tagtcccaagtgtgtctactgcagctatttctagccaaatcaacactta 286
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tagtcccaagtgtgtctactgcagctatttctagccaaatcaacactta 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space:   187806
Effective search space used:   187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)