Query= MSMg01no232_e01.b1 MSMg01no232_e01.b1 CHROMAT_FILE:
MSMg01no232_e01.b1 PHD_FILE: MSMg01no232_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:42 2005
(683 letters)
>mm_chr4_85549945_85551027
Length = 1083
Score = 1073 bits (555), Expect = 0.0
Identities = 654/719 (90%), Gaps = 50/719 (6%)
Strand = Plus / Plus
Query: 5 gaattcaggtgtggcctgggcctatacagatggcacaaaatcaccaggctattaactacg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaattcaggtgtggcctgggcctatacagatggcacaaaatcaccaggctattaactacg 234
Query: 65 tccactctcagttttccaggcagaaaacaggtatgcatctcaaatttttgagagtctaac 124
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 235 tccactctcagttttccaggcagaaaacaggtatgcatctcaaaattttgagggtctaac 294
Query: 125 atggattagaaaccacagctagaaaacaattggctttaaaaccactcaggcgtggagaga 184
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 295 atggattagaaaccacagttagaaaacaattggctttaaaaccactcaggcgtgaagaga 354
Query: 185 tggctcagcagttgagtacatgttcctctttctgagaacctgaatctgtggttcctggta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tggctcagcagttgagtacatgttcctctttctgagaacctgaatctgtggttcctggta 414
Query: 245 cctaggtcaggtgacttacagccttctacagatctagcttcaggagatctgacacctctt 304
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 415 cctaggtcaggtgacttacagccttctacagctctagcttcaggcgatctgacacctctt 474
Query: 305 ccggattccaaaggcattgcattcatgtgtatttggtgcttgtgtgcaacaccacacaca 364
| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 475 ctggattccaaaggcattgcattcatgtgtatttggtggttgtgtgcaacatcacacaca 534
Query: 365 cacacacacacacacacacacttgcatgtacacacatgtgcacgcatgcatgcgcac--- 421
|||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 535 cacacacacaca----------tgcatgtacacacgtgtgcacgcatgcatgcgcacgcg 584
Query: 422 -------------------------------------acacacacacacacacacacaca 444
|||||||||||||||||||||||
Sbjct: 585 tgcgcgtgcacacacacacacacacaaacacacacacacacacacacacacacacacaca 644
Query: 445 cacacacacacacacacaattaaaactaaatccaaaagtatcaaagaagacactggtaga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 645 cacacacacacacacacaattaaaactaaatccaaaagtatcaaagaagacactgataga 704
Query: 505 aactccctagtcatagaaatggaactgactcttctcactcttgacccgttataaacatgc 564
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 705 gactccctagtcatagaaatgaaactgactcttctcactcttgacccgttataaacatac 764
Query: 565 caccctgtaagtcttagaagacttttcttagttttccaaatcctctgtaaaatgcgaaca 624
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 caccctgtaagtcttagaaaacttttcttagttttccaaatcctctgtaaaatgcgaaca 824
Query: 625 acaacaacaataatattaatgataatattagtcatacttactccttagattgttagtga 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 acaacaacaataatattaatgataatattagtcatacttactccttagattgttagtga 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_e01.g1 MSMg01no232_e01.g1 CHROMAT_FILE:
MSMg01no232_e01.g1 PHD_FILE: MSMg01no232_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:42 2005
(287 letters)
>mm_chr4_85682878_85683564
Length = 687
Score = 524 bits (271), Expect = e-153
Identities = 283/287 (98%)
Strand = Plus / Minus
Query: 1 ttagtaagtgagctgaaattttgtagatatgtctatatacatacatatttgttttccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttagtaagtgagctgaaattttgtagatatgtctatatacatacatatttgttttccagg 428
Query: 61 aagagaattggcaacttttgttatatgatgtctatgctatatgtgccttaagaaaattca 120
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 427 aagagaattggcaacttttgttatatgatgtctatgctacatgtgtcttaagaaaattca 368
Query: 121 ctgcttaaagtttttgtttatactcttattggtttggatcaactgaggcacaccttcttc 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 367 ctgcttaaagtttttgtttatactcttattggtttagatcaactgaggcacaccttcttc 308
Query: 181 tagaggaggagagtagataagatgccatttcaagtcactctagattctcataaaatgttt 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 307 tagaggaggagagtagataagatgccatttcaagtcactctagattcttataaaatgttt 248
Query: 241 gagaaaatgtgagacttgtgtgaatgagatagcaaagagaggagaga 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gagaaaatgtgagacttgtgtgaatgagatagcaaagagaggagaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
