MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-232I21
Chromosome	4 (Build37)
Map Location	10,864,336 - 10,864,513
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik
Downstream gene	LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC666840 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666840
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs, 16 Proteins pseudo : _no_value

name	1700123O12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73624 MGI:1920874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC383991 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383991
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100039656 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1088 ESTs, 10 Proteins

name	LOC545589 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545589
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 559 ESTs, 13 Proteins pseudo : _no_value

name	2610301B20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67157 MGI:1914407
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC383992 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383992
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 4 Proteins pseudo : _no_value

name	LOC100039746 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039746
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	Plekhf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71801 MGI:1919051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310030N02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76947 MGI:1924197
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs, 1 Protein

name	LOC546828 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546828
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	LOC666897 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Trp53inp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60599 MGI:1926609
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccne2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12448 MGI:1329034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ints8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72656 MGI:1919906
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dpy19l4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381510 MGI:2685869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm35a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207920 MGI:1917326
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC634834 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:634834
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 2 Proteins pseudo : _no_value

name	1110037F02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66185 MGI:1913435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039847 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039847
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	E130016E03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623474 MGI:2444973
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039862 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Gem (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14579 MGI:99844
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdh17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12557 MGI:1095414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700123O12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94371466 GeneID:73624 MGI:1920874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 1700123O12 gene, transcript variant 1 transcript_id : XM_896951.2

name	LOC100039656 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252073 GeneID:100039656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1088 ESTs, 10 Proteins product : similar to ribosomal protein L13 transcript_id : XM_001473362.1

name	2610301B20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42475982 GeneID:67157 MGI:1914407
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610301B20 gene transcript_id : NM_026005.2

name	Plekhf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560749 GeneID:71801 MGI:1919051
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pleckstrin homology domain containing, family F (with FYVE domain) member 2 transcript_id : NM_175175.3

name	2310030N02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94371431 GeneID:76947 MGI:1924197
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs, 1 Protein product : RIKEN cDNA 2310030N02 gene, transcript variant 1 transcript_id : XM_131300.7

name	LOC546828 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252077 GeneID:546828
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : similar to SMT3 suppressor of mif two 3 homolog 2, transcript variant 1 transcript_id : XM_001473517.1

name	LOC546828 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252079 GeneID:546828
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to SMT3 suppressor of mif two 3 homolog 2, transcript variant 2 transcript_id : XM_001473542.1

name	Trp53inp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380186 GeneID:60599 MGI:1926609
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transformation related protein 53 inducible nuclear protein 1 transcript_id : NM_021897.2

name	Ccne2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:80861470 GeneID:12448 MGI:1329034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin E2 transcript_id : NM_001037134.1

name	Ccne2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90186268 GeneID:12448 MGI:1329034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin E2 transcript_id : NM_009830.3

name	Ints8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344002 GeneID:72656 MGI:1919906
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrator complex subunit 8 transcript_id : NM_178112.4

name	Dpy19l4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487096 GeneID:381510 MGI:2685869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dpy-19-like 4 (C. elegans) transcript_id : NM_001081201.1

name	Rbm35a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34610208 GeneID:207920 MGI:1917326
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 35A transcript_id : NM_194055.1

name	1110037F02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487144 GeneID:66185 MGI:1913435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110037F02 gene transcript_id : NM_001081183.1

name	LOC100039847 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252083 GeneID:100039847
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : similar to contactin associated protein 1 transcript_id : XM_001473658.1

name	E130016E03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130991 GeneID:623474 MGI:2444973
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E130016E03 gene transcript_id : NM_001039556.2

name	Gem (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802514 GeneID:14579 MGI:99844
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP binding protein (gene overexpressed in skeletal muscle) transcript_id : NM_010276.2

name	Cdh17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374737 GeneID:12557 MGI:1095414
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cadherin 17 transcript_id : NM_019753.3

name	1700123O12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82801214 GeneID:73624 MGI:1920874
definition	codon_start : 1 product : hypothetical protein LOC73624 isoform 1 protein_id : XP_902044.1

name	LOC100039656 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252074 GeneID:100039656
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473412.1

name	2610301B20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42475983 CCDS:CCDS17961.1 GeneID:67157 MGI:1914407
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC67157 protein_id : NP_080281.2

name	Plekhf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29611667 CCDS:CCDS17962.1 GeneID:71801 MGI:1919051
definition	codon_start : 1 note : pleckstrin homology domain containing family F (with FYVE domain) member 2 product : phafin 2 protein_id : NP_780384.1

name	2310030N02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82801220 GeneID:76947 MGI:1924197
definition	codon_start : 1 product : hypothetical protein LOC76947 isoform 1 protein_id : XP_131300.5

name	LOC546828 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252078 GeneID:546828
definition	codon_start : 1 product : similar to SMT3 suppressor of mif two 3 homolog 2 isoform 1 protein_id : XP_001473567.1

name	LOC546828 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252080 GeneID:546828
definition	codon_start : 1 product : similar to SMT3 suppressor of mif two 3 homolog 2 isoform 2 protein_id : XP_001473592.1

name	Trp53inp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11230806 CCDS:CCDS17964.1 GeneID:60599 MGI:1926609
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006917 - induction of apoptosis [Evidence IDA]; GO:0006950 - response to stress [Evidence IDA] codon_start : 1 note : thymus expressed acidic protein; stress induced protein product : transformation related protein 53 inducible nuclear protein 1 protein_id : NP_068697.1

name	Ccne2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:80861471 CCDS:CCDS17965.1 GeneID:12448 MGI:1329034
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006270 - DNA replication initiation [Evidence IMP]; GO:0000074 - regulation of progression through cell cycle [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; cyclin E 2 product : cyclin E2 isoform 1 protein_id : NP_001032211.1

name	Ccne2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753312 CCDS:CCDS17966.1 GeneID:12448 MGI:1329034
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006270 - DNA replication initiation [Evidence IMP]; GO:0000074 - regulation of progression through cell cycle [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; cyclin E 2 product : cyclin E2 isoform 2 protein_id : NP_033960.1

name	Ints8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982254 CCDS:CCDS17967.1 GeneID:72656 MGI:1919906
definition	GO_component : GO:0032039 - integrator complex [Evidence ISS] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0016180 - snRNA processing [Evidence ISS] codon_start : 1 exception : mismatches in translation product : integrator complex subunit 8 protein_id : NP_835213.2

name	Dpy19l4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487097 GeneID:381510 MGI:2685869
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : dpy-19-like 4 protein_id : NP_001074670.1

name	Rbm35a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610209 GeneID:207920 MGI:1917326
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : RNA binding motif protein 35A protein_id : NP_918944.1

name	1110037F02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487145 GeneID:66185 MGI:1913435
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC66185 protein_id : NP_001074652.1

name	LOC100039847 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252084 GeneID:100039847
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473708.1

name	E130016E03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88319960 CCDS:CCDS17970.1 GeneID:623474 MGI:2444973
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : fibrinogen silencer binding protein, homolog; novel protein similar to RAD54 homolog B product : RAD54 homolog B protein_id : NP_001034645.1

name	Gem (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753972 CCDS:CCDS17971.1 GeneID:14579 MGI:99844
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : GTP binding protein (gene overexpressed in skeletal muscle) protein_id : NP_034406.1

name	Cdh17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790073 CCDS:CCDS17972.1 GeneID:12557 MGI:1095414
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IDA]; GO:0005427 - proton-dependent oligopeptide transporter activity [Evidence IDA] GO_process : GO:0016339 - calcium-dependent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0006857 - oligopeptide transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : liver-intestine cadherin; BILL-cadherin; LI-cadherin product : cadherin 17 protein_id : NP_062727.1

name	LOC383991 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383991
definition	number : 1 pseudo : _no_value

name	LOC383991 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383991
definition	number : 2 pseudo : _no_value

name	LOC666897 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666897
definition	number : 1 pseudo : _no_value

name	LOC100039862 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039862
definition	number : 4 pseudo : _no_value

name	LOC100039862 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039862
definition	number : 3 pseudo : _no_value

name	LOC100039862 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039862
definition	number : 2 pseudo : _no_value

name	LOC100039862 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039862
definition	number : 1 pseudo : _no_value

name	LOC666840 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252072 GeneID:666840
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs, 16 Proteins product : similar to Ldha protein pseudo : _no_value transcript_id : XR_001926.2

name	LOC545589 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252075 GeneID:545589
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 559 ESTs, 13 Proteins product : similar to pendulin pseudo : _no_value transcript_id : XR_031201.1

name	LOC383992 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252076 GeneID:383992
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 4 Proteins product : similar to ribosomal protein S11 pseudo : _no_value transcript_id : XR_035662.1

name	LOC100039746 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252081 GeneID:100039746
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to mitochondrial ribosomal protein S16 pseudo : _no_value transcript_id : XR_031219.1

name	LOC634834 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252082 GeneID:634834
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 2 Proteins product : similar to glycosyltransferase 8 domain containing 3 pseudo : _no_value transcript_id : XR_031318.1

clone name	MSMg01-192D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092F16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-350K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394B03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-232I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548I18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-540I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225B22
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-232I21.T7 (MSMg01no232_i21.b1)	MSMg01-232I21.TJ (MSMg01no232_i21.g1)
ACC	AG399024	AG399025
length	764	795
length of high quality (start - end)	491 (45 - 535)	169 (130 - 298)
definition	CHROMAT_FILE: MSMg01no232_i21.b1 PHD_FILE: MSMg01no232_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:04 2005	CHROMAT_FILE: MSMg01no232_i21.g1 PHD_FILE: MSMg01no232_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:04 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCTAAACTCACAGGCTTCTGGGACCTTGGAACAATGGGGAGACTTAAC TATAAAAGAATTTTTCCATACACCCGATTAAGGGAATAGGGTATGAGTAT ATGGGTAAATGGGAACGCCAAAGCTCCAGGAGGTGAGTTTCCTTGAAACT CTTTTCCTCGTTGAGTGCTTTCAGACTTTCAGCCTGTCAAGCAGACTTGA CCAGAGGGCGTGGCAGTCACTCAGTCACGGTCCATTTGAACATTTTCATA CAGCACAAAGATTTTCACGTTGTTTTAAGACAGGGTATCACTATATATCC CTGGCTGGCCTAGATCTTTCCACGTAGACCAAGCTGATCTTCAGAGATCC ACCTGCCTCTGCTTCCCACCCCTGAGATTAGAGGTGTGCATTAGCACACT CAGCTGCTACTGTTTTAAACCTTGTCTGATGTTAGGTAGAATAAAGTCTT GGTAATGTTATTTATTTATTTATTTATTTATTTATTCATTTCCTTACCTT CTCTTTTCAATTATTCTTCTCCTTCCTTTTCCTCTTCTCTTTTTCCCCTT TCTTCCCCTTTCCTTTCTTCTCCTCTTTTCCTTTTCTTTTTCCCTCTCCC TTCTTTTTTCCTTTCCCACTTCTTTCTCCCTTTATTTCCTTTTCTTTCCC TATACTTACCCTTTTCTTCCCTTCATTTATTTCCTTTATTTTAAACCTTT TACTTCCCTTTTTN	CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTCCTTCCTTCCCAGACATT TAACACCTCCTGAGCAGCTGCATAGGCTTAGATCCCTGTACCCCAACAGT GGGTACCACCTTACTCTTTACCTGTGGAAGGAGGAGGCTAAGAGAAGAAA TAGGTGGGCCCATGATGGAAAGGGGGGGGTTTAAGAATGAGTAACTGGGG GCAGGGTGTCCTGGCCTTGAGGATCACGTTGTTGTTGTTGTTGTTGTTGC TGCTGTCGCTCCCNCCCCCCTTTTTTTTTTTTTTCGCCTCCCTTTCCCCT GCTTCTCCATCCTTTTTTTTTCCCCCCCCCCCCCTGGGTGTGTTTTTTTC TCGGTTTTTGTTTTTCGCCCCCCCCCCAAAAAAAAAAAATAGTGGTTTGG GGCGTTCTCCTTCCCCTTTTCCTTATTCCGCCTTCTCCTTCTCCCTGTTC CTTTCTTCTCCCCTCTCCCTCTTCCCCTCTTTCCGTTCCCCTTTTTCCTC CTTTTCCCTTTTCCCCCCCCCCCCTGTATTCTTCCCCGTTCTTTCTTTTC CGCCCCCTATTTCCTCTCCTTGCACCTCTTTCCTCCCTCTTTCTCCCTTT CCCCCGTTCTTTTTCCTTTCCCCCCTCCTCCGCCCTTTTTCCTTCTTCTT GTCCCCTCTGTTTCCCTCTCTTTTCCGTCTGTATCCTTTCTTTCCCGCTA TTTTTTCCGCTTTTTCCCCATTCGTTCTCCCACTTTCACCTTTCT
quality values	Open. Hide. 8 8 8 8 8 8 15 19 33 41 29 29 28 22 17 19 9 9 9 22 22 39 48 48 35 30 30 30 32 36 57 39 39 35 35 35 35 40 44 42 42 34 36 36 42 43 68 68 47 47 47 47 50 51 68 68 68 68 51 50 50 42 42 37 37 41 44 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 59 59 59 59 59 50 50 50 50 50 36 59 44 37 30 30 19 26 14 18 18 10 10 10 13 21 32 47 59 59 59 33 36 36 36 36 36 57 50 43 43 43 47 47 53 53 53 47 43 43 43 43 57 57 68 68 68 68 68 50 54 54 54 54 57 57 59 59 59 68 68 68 68 68 68 68 50 51 51 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 59 68 68 68 59 59 68 68 57 57 57 57 57 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 44 44 35 39 39 57 44 36 25 25 28 44 44 57 54 54 57 57 57 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 59 59 59 59 30 28 24 12 11 11 12 12 18 30 30 37 24 24 18 12 12 12 12 12 25 24 20 25 32 34 41 48 50 53 53 57 57 57 57 57 57 57 57 57 57 48 48 48 48 59 59 59 46 46 46 43 31 28 14 12 12 12 9 9 9 12 12 23 28 34 36 41 36 34 34 28 34 39 43 43 57 57 57 59 59 59 43 44 36 36 36 43 43 57 43 48 43 43 43 48 48 57 57 57 57 57 48 48 48 48 57 57 59 59 59 59 59 57 57 48 48 48 57 57 57 57 54 48 48 47 59 43 43 43 44 43 47 47 54 47 47 47 47 42 44 32 28 20 19 25 32 37 41 41 43 48 46 48 48 48 48 48 48 43 43 37 35 32 32 43 30 23 28 32 30 25 13 11 11 13 18 13 14 16 19 16 11 14 14 19 15 15 17 14 8 9 8 10 11 10 10 10 9 10 8 8 8 8 6 7 8 8 8 8 9 9 10 10 13 13 11 11 11 18 18 13 8 8 8 8 8 8 8 8 7 6 8 10 8 8 9 10 12 13 9 13 13 14 14 14 14 14 10 13 12 9 10 10 10 10 8 10 10 10 11 19 21 18 18 18 18 19 14 13 13 15 12 10 9 9 10 8 8 8 8 19 19 12 12 7 7 8 8 10 13 16 18 16 12 13 13 10 10 8 8 8 8 9 13 15 12 14 10 10 10 10 10 8 8 8 8 9 10 10 10 19 13 10 10 10 8 8 8 8 8 8 8 8 10 11 12 11 14 15 11 8 8 8 8 8 10 11 11 11 6 8 8 8 8 11 12 11 13 10 10 11 11 11 15 13 10 10 13 6 6 6 8 8 8 8 11 10 10 10 12 19 21 12 12 12 17 17 11 12 11 16 15 14 14 15 17 10 8 6 6 7 7 13 3 0	Open. Hide. 6 6 15 15 13 8 8 8 8 8 8 17 31 37 37 37 37 37 50 50 50 50 53 53 53 50 50 50 50 47 41 25 22 9 9 7 8 8 8 21 15 28 28 33 32 44 47 53 53 53 38 38 36 37 50 50 53 53 53 57 48 43 28 30 30 22 26 20 24 24 34 26 42 47 47 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 51 50 47 47 47 47 42 47 50 50 59 50 42 42 38 38 38 57 57 50 50 50 41 37 37 37 37 30 24 15 11 11 11 14 10 10 8 8 8 8 23 22 37 37 37 59 59 48 48 48 59 57 57 57 50 50 50 53 50 50 57 57 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 50 50 50 50 50 57 57 59 57 59 59 59 59 68 68 68 68 68 59 59 59 68 68 68 68 57 57 57 57 57 57 57 57 57 57 59 59 68 68 68 59 59 59 59 59 59 48 48 47 47 59 48 59 57 68 68 68 68 68 50 54 54 54 54 57 54 54 54 54 48 47 46 39 39 30 32 32 40 40 43 36 33 36 25 19 19 12 12 8 8 8 10 10 9 11 8 8 8 8 8 3 0 3 12 10 10 10 10 8 6 6 6 8 8 11 14 22 20 18 12 12 8 6 6 6 8 10 10 15 13 18 12 13 11 10 10 10 10 10 9 17 17 10 8 8 6 6 8 8 9 9 11 16 21 30 24 22 22 22 24 28 30 31 20 15 19 19 23 22 21 13 12 17 15 8 6 6 8 10 10 8 8 9 9 10 23 13 8 8 10 10 8 8 8 8 11 18 15 17 11 9 6 6 8 8 8 9 11 11 11 13 13 10 12 12 14 17 11 14 14 14 22 16 24 15 10 8 8 6 6 8 8 7 8 9 10 12 10 10 10 10 10 10 9 10 9 9 9 9 9 9 10 10 10 15 10 9 9 9 8 12 9 9 9 9 8 8 6 6 8 8 12 8 8 8 8 10 11 11 14 10 9 9 10 10 10 8 10 13 11 17 13 12 11 15 8 8 8 11 10 10 11 10 10 10 12 10 12 11 9 8 8 11 10 8 10 9 9 15 15 12 9 8 8 8 11 11 12 12 11 12 14 14 12 12 8 8 8 8 8 11 15 10 10 9 10 10 11 11 11 8 8 8 8 12 11 13 13 12 12 10 11 8 10 8 6 8 6 7 10 10 9 8 12 9 9 9 8 10 10 8 8 8 9 12 16 8 8 8 8 8 12 12 8 8 8 8 15 10 8 9 8 8 8 8 8 8 9 6 8 6 7 8 8 8 8 8 10 12 13 12 10 12 16 12 11 12 9 14 10 10 8 10 10 10 10 10 13 10 16 16 16 10 11 12 10 9 8 10 10 10 8 8 8 10 9 8 11 17 18 14 14 15 11 11 12 10 15 10 8 8 8 8 8 13 15 28 14 9 9 11 9 9 10 9 8 10 8 8 8 10 10 21 24 15 13 10 10 10 15 23 18 14 12 10 9 9 9 11 11 11 19 9 8 10 8 10 8 9 9 10 10 14 12 12 13 15 13 10 9 9 9 8 8 8 8 8 8 9 9 9 10 13 12 12 10 9 12 21 17 16 21 16 16 14 14 11 11 10 10 12 14 12 12 14 16 12 9 9 6 6 8 8 8 8 8 8 10 8 16 12 12 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no232_i21.g1 MSMg01no232_i21.g1 CHROMAT_FILE:
MSMg01no232_i21.g1 PHD_FILE: MSMg01no232_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:04 2005
         (169 letters)



>mm_chr4_10864136_10864704
          Length = 569

 Score =  290 bits (150), Expect = 3e-83
 Identities = 167/178 (93%), Gaps = 9/178 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatccctgtaccccaacagtgggtaccaccttactctttacctgtggaaggaggaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatccctgtaccccaacagtgggtaccaccttactctttacctgtggaaggaggaggct 260

                                                                       
Query: 61  aagagaagaaataggtgggcccatgatggaaagggggggg---------tttaagaatga 111
           ||||||||||||||||||||||||||||||||||||||||         |||||||||||
Sbjct: 261 aagagaagaaataggtgggcccatgatggaaagggggggggaggggtggtttaagaatga 320

                                                                     
Query: 112 gtaactgggggcagggtgtcctggccttgaggatcacgttgttgttgttgttgttgtt 169
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gtaactgggggcggggtgtcctggccttgaggatcacattgttgttgttgttgttgtt 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information