BAC Information

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BAC

Clone NameMSMg01-233F23
Chromosome4 (Build37)
Map Location 66,194,323 - 66,194,630
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, Trim32
Downstream geneLOC667499, Tlr4, LOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233F23.T7 (MSMg01no233_f23.b1)MSMg01-233F23.TJ (MSMg01no233_f23.g1)
ACCAG399600AG399601
length710685
length of high quality
(start - end)		313 (45 - 357)38 (72 - 109)
definitionCHROMAT_FILE: MSMg01no233_f23.b1 PHD_FILE: MSMg01no233_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:04 2005CHROMAT_FILE: MSMg01no233_f23.g1 PHD_FILE: MSMg01no233_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCCACTGAGCTTAGCAGGTAAAATCTAGTATGGAGTATCTATCA
GTGTATATCTTATGAATTGTTCTAGGGTTGAAAGAGAGAACTGGAGAACA
CAGACCATTTGAAGCTTCACTTTTTCCCCATTTAATTAATTAGTTATTTA
ATTCACTTTACATCCTGATTGCTGCCCCCCTCATCTCTCCCCTCACACAG
TCCCTTCACCATCCTTCACATTCTTCTTTGAGAGTCTGGCACATCAAGTA
TCTGCAGGACTAGGCATATCCTCTCCCACTGAGGCCAGACAAGGCAGCCT
AGTTAGTTTTTTAGGATCCCCACCAGGCAACAGCTTTAGGGACAACCTCC
TATCCAGTTTTTGGGGACTCACATGAAGACTGAGCTGTACATATTCTACA
TATGTATGTGGGAGGCTAGGAGCTGTCTATGTATGCTTTTTGGTTAGTGG
TTTAGTCTCTGAGAGAGCCCAAGCGTCCAGGTTAGTTGACTCTGTCAGTC
TTTCTGTGGGGTTTCTAACCTCTCCGGTGCCCTTGATCTGAAGCTTCCTT
TTATAATAAGGTGTTTTTCTTTTATCTGTTGCACGCATGGATGTTTCTAT
TTTCATGAGCATGAAAATCTTTATTAGTCATGATTTTATGACAAAATGTC
TGAGAAATAA

TCATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATAAAAACGTTAAGCAAGAAACTGCAAA
TATATGCAGAAAAACATGGGTTGCACAACACCATGCCTTAACTCTTCGTT
TTCATGGTTCAATAACTCATATGATTTAAAGGCATTTTAACTTAAGGCCC
CCCATCCCCCCGNNNGNTTTCCTTTAAAAAATAATTTTTAAAAAAATTAA
TTTAGGGCCCTCCCCAAGGTTGGTCCCCCCCCGAAATTTCCCTGGAAAAA
AAATTTCTCCCCCCCCTTTTTTTCCCCCCCCTTAAAAATGAAGAAAAAAA
AACCCCCCCCCCCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTACAGGG
GGGGGGGGGGGCCCCCCCCANCNCCCCCAAAATCNGGGGTTTTTGGTATT
ATATAAAATTAAAAAAAAACAAACACCCCCCNNCAAACAATCCTCTCCTT
CCCCCCCCCCTCCCCCCCCCCCCCCCCCCCGGTTTTTTCCCCCCNAAAAA
AAAAAAAAAAAAAAAAAATTTTTTTTTTTTTGTTTGTNCTCCCGCCCCCC
CCCCCCCTCTTCTCTTTTTTTTTTTCTTCCTCCCTCCCTCCCCGCCGGGC
GGGGGGAACCGATCTCTTCTTCCCCCCTCCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_f23.b1 MSMg01no233_f23.b1 CHROMAT_FILE:
MSMg01no233_f23.b1 PHD_FILE: MSMg01no233_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:04 2005
         (313 letters)



>mm_chr4_66194119_66194831
          Length = 713

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattccactgagcttagcaggtaaaatctagtatggagtatctatcagtgtatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattccactgagcttagcaggtaaaatctagtatggagtatctatcagtgtatat 264

                                                                       
Query: 65  cttatgaattgttctagggttgaaagagagaactggagaacacagaccatttgaagcttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttatgaattgttctagggttgaaagagagaactggagaacacagaccatttgaagcttc 324

                                                                       
Query: 125 actttttccccatttaattaattagttatttaattcactttacatcctgattgctgcccc 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accttttccccatttaattaattagttatttaattcactttacatcctgattgctgcccc 384

                                                                       
Query: 185 cctcatctctcccctcacacagtcccttcaccatccttcacattcttctttgagagtctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctcatctctcccctcacacagtcccttcaccatccttcacattcttctttgagagtctg 444

                                                                       
Query: 245 gcacatcaagtatctgcaggactaggcatatcctctcccactgaggccagacaaggcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacatcaagtatctgcaggactaggcatatcctctcccactgaggccagacaaggcagc 504

                   
Query: 305 ctagttag 312
           ||||||||
Sbjct: 505 ctagttag 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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